|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C2p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C2p_exo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C2p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward pairing |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Bs/Ww pairing antiparallel cis one_hbond |
|
A39-A40 : G-A O2'/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C4p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward pairing |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A21-A27 : C-C Ws/Hh pairing parallel trans one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A31-A35 : G-A Ss/Wh O2'/Bh pairing parallel trans one_hbond |
|
A39-A40 : G-A O2'/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C4p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A10 : C-A Ws/Hw pairing antiparallel trans one_hbond |
|
A7-A9 : U-A Hh/O2P pairing |
|
A7-A10 : U-A Ww/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A34 : G-C O2P/Bh pairing |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel trans one_hbond |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A34 : G-C O2P/Bh pairing |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G O4p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C4p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 27 |
|
Number of adjacent stackings = 26 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A O2'/Ss pairing |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A22-A25 : U-U Ww/O2P pairing |
|
A24-A41 : U-A Ws/Wh pairing antiparallel cis one_hbond 46 |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C4p_exo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C2p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A4 : G-A O2'/Hh adjacent_5p pairing |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel trans 137 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C O4p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A41 : U-A Ws/Wh pairing antiparallel trans one_hbond 46 |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C2p_exo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C2p_exo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 24 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel cis one_hbond 131 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A41 : U-A Ws/Wh pairing antiparallel trans one_hbond 46 |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A32-A35 : G-A O2'/Bh pairing |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C4p_exo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C2p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C2p_exo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C2p_exo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A4 : G-A O2'/Hh adjacent_5p pairing |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Bh O2'/Bh pairing parallel trans one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C4p_exo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C4p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C2p_exo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A4 : G-A O2'/Hh adjacent_5p pairing |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel cis 137 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Bh O2'/Bh pairing parallel trans one_hbond |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis XX |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G O4p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C4p_exo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 24 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel trans one_hbond |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C4p_exo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C4p_exo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C4p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A3 : G-G O2'/C8 adjacent_5p pairing |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A9 : U-A Hh/O2P Ww/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A21-A37 : C-C O2'/Bh pairing |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis XX |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C O4p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C2p_exo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A10 : C-A Bh/O2P Bh/O2P pairing |
|
A7-A9 : U-A Hh/O2P pairing |
|
A7-A10 : U-A Ww/O2P pairing |
|
A8-A9 : C-A O2'/Hh adjacent_5p pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C2p_exo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C4p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C2p_exo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs O2'/Ss pairing parallel cis one_hbond |
|
A21-A27 : C-C Ws/Wh pairing antiparallel trans one_hbond 137 |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis XX |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A32-A34 : G-C O2P/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C2p_exo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C4p_exo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward pairing |
|
A19-A20 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A10 : U-A Ww/O2P pairing |
|
A16-A17 : C-C O2'/Hh adjacent_5p pairing |
|
A17-A18 : C-C O2P/Bh adjacent_5p upward pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A22 : C-U O2'/Hh adjacent_5p pairing |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A1 : G C1p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C2p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C4p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward pairing |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A2 : G-G O2'/Hh adjacent_5p upward pairing |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw pairing parallel cis one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A41 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A34 : G-C O2P/Bh pairing |
|
A32-A35 : G-A O2'/Bh pairing |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C2p_exo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C4p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C2p_exo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C4p_exo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C1p_exo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A10 : C-A Ws/Hw pairing antiparallel trans one_hbond |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A32-A35 : G-A O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C O4p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward pairing |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 28 |
|
Number of adjacent stackings = 27 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel trans 137 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A35 : C-A Ws/Wh pairing parallel trans one_hbond 79 |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs O2'/Ss pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A22-A36 : U-U Ww/O2P pairing |
|
A24-A41 : U-A Ws/Wh pairing antiparallel trans one_hbond 46 |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A39-A40 : G-A O2'/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C3p_exo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A10 : C-A Ws/Wh pairing antiparallel trans one_hbond 78 |
|
A7-A9 : U-A Hh/O2P pairing |
|
A7-A10 : U-A Ww/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A27 : C-C Ws/Hw pairing antiparallel trans one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Ws/Ww pairing antiparallel cis one_hbond |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C4p_exo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C1p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C3p_exo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A4 : G-A O2'/Hh adjacent_5p pairing |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Hw pairing antiparallel trans one_hbond |
|
A7-A9 : U-A Hh/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A35 : C-A Ws/Wh pairing parallel trans one_hbond 79 |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Bs/Bs pairing parallel cis one_hbond |
|
A21-A27 : C-C O2'/Bh pairing |
|
A21-A37 : C-C O2'/Bh pairing |
|
A22-A37 : U-C O2P/Bh pairing |
|
A23-A26 : U-C O2P/Bh pairing |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C4p_exo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A21-A37 : C-C O2'/Bh pairing |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Bs/Ww pairing antiparallel cis one_hbond |
|
A31-A35 : G-A Ss/Wh pairing antiparallel trans one_hbond 63 |
|
A35-A36 : A-U O2'/Hh adjacent_5p pairing |
|
A39-A40 : G-A O2'/Hh adjacent_5p pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C2p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C2p_exo anti |
|
A33 : U C3p_exo anti |
|
A34 : C C2p_exo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Wh pairing antiparallel cis one_hbond 131 |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Ws/Bs pairing parallel cis one_hbond |
|
A21-A27 : C-C O2'/Bh pairing |
|
A21-A37 : C-C O2'/Bh pairing |
|
A24-A25 : U-U Hh/Hw adjacent_5p pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Bs/Ww pairing antiparallel cis one_hbond |
|
A34-A35 : C-A O2P/Hh adjacent_5p pairing |
|
A35-A36 : A-U O2'/Hh adjacent_5p pairing |
|
A43-A44 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C4p_exo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C4p_exo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C4p_exo anti |
|
A40 : A C2p_exo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward pairing |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A28-A38 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A1-A18 : G-C Bs/O2' pairing |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A11 : C-C Ww/Bh pairing antiparallel trans 137 |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A35 : G-A Bs/Ww pairing parallel cis one_hbond 56 |
|
A31-A35 : G-A Ss/Wh O2'/Bh pairing parallel trans one_hbond |
|
A39-A40 : G-A O2'/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C O4p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C2p_exo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : U C2p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : A C3p_endo anti |
|
A30 : G C3p_endo anti |
|
A31 : G C2p_exo anti |
|
A32 : G C3p_endo anti |
|
A33 : U C2p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : U C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : G C3p_endo anti |
|
A39 : G C3p_endo anti |
|
A40 : A C3p_endo anti |
|
A41 : A C3p_endo anti |
|
A42 : C C3p_endo anti |
|
A43 : C C3p_endo anti |
|
A44 : A O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
A43-A44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A14 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A9 : U-A Hh/O2P pairing |
|
A7-A10 : U-A Ww/O2P pairing |
|
A18-A32 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A31 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A35 : C-A Ws/Wh pairing parallel trans one_hbond 79 |
|
A20-A30 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A35 : C-A Bs/Bs O2'/Ss pairing parallel cis one_hbond |
|
A21-A37 : C-C Ss/Hw O2'/Bh pairing parallel trans one_hbond |
|
A22-A24 : U-U Hh/O2P pairing |
|
A24-A25 : U-U Hh/Hw adjacent_5p pairing parallel cis one_hbond |
|
A25-A40 : U-A Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : A-U Ww/Ww pairing antiparallel cis XX |
|
|
