|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A O4p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
A9-A15 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
A9-A15 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
A9-A15 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A O4p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
A9-A15 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A O4p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : U C3p_exo anti |
|
A12 : U C3p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A6-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A5-A17 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A8-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
|
