|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward pairing |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-A28 : outward |
|
A6-A25 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A23-A24 : A-C O2P/Bh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C4p_exo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C3p_exo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A27 : outward |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A7-A9 : C-U Ws/Hh pairing parallel cis one_hbond |
|
A7-A17 : C-G Hw/Hh pairing antiparallel cis one_hbond 116 |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A16-A17 : U-G O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C4p_exo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A11-A21 : outward |
|
A12-A20 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis 128 |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A7 : G-C O2'/Hh adjacent_5p pairing |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : C-U Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A16 : A-U Ss/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A7-A8 : C-U Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A24-A26 : C-C O2P/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo syn |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-A28 : outward |
|
A4-A27 : outward |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A16 : upward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 7 |
|
Base-pairs |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_exo anti |
|
A7 : C C3p_exo syn |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A18 : A-C O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C3p_exo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A9 : C-U Ws/Hh pairing parallel cis one_hbond |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A18 : A-C O2'/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis 128 |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A16 : A-U O2'/Ww Ss/O2' pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C4p_exo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C3p_exo anti |
|
A17 : G C2p_endo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A12-A20 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C2p_endo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C4p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ws/Wh pairing antiparallel cis one_hbond |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Wh pairing antiparallel cis one_hbond |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A15 : C-G O2P/Ww O2P/Bs pairing |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C4p_exo anti |
|
A6 : G C2p_endo syn |
|
A7 : C C2p_endo anti |
|
A8 : U C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-A29 : outward |
|
A3-A28 : outward |
|
A6-A25 : outward |
|
A10-A22 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 7 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : C-U Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_exo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo anti |
|
A18 : C C2p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A16 : A-U Ss/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A10-A22 : outward |
|
A11-A21 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A7 : G-C O2'/Hh adjacent_5p pairing |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A18 : U-C O2P/Bh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C2p_endo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C2p_endo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A25 : outward |
|
A10-A22 : outward |
|
A11-A21 : outward |
|
A12-A20 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 6 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A10-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A14-A15 : A-G O2P/Bs adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C2p_endo anti |
|
A7 : C C2p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : G C3p_exo syn |
|
A16 : U C2p_endo anti |
|
A17 : G C3p_exo syn |
|
A18 : C C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : U C3p_endo anti |
|
A28 : C C3p_endo anti |
|
A29 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-A29 : outward |
|
A4-A27 : outward |
|
A6-A25 : outward |
|
A14-A17 : outward |
|
A17-A19 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A1-A29 : G-C Ww/Ww pairing antiparallel cis |
|
A2-A28 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A27 : A-U Ww/Ww pairing antiparallel cis XX |
|
A4-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A25 : U-G Ww/Wh pairing antiparallel cis one_hbond |
|
A6-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : C-U Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
A8-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A22 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A11-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A12-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A13-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
|
