|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C3p_exo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C1p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward pairing |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A13 : U-C Ws/Bh pairing antiparallel cis one_hbond 100 |
|
A8-A9 : C-C O2P/Bh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C4p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A13 : U-C Ws/Wh pairing antiparallel cis one_hbond 100 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C1p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A13 : U-C Ws/Hw pairing antiparallel trans one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : C O4p_exo anti |
|
A12 : G O4p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C2p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C2p_exo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A13 : U-C Ws/Wh pairing antiparallel cis one_hbond 100 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G O4p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C2p_endo anti |
|
A11 : C C1p_endo anti |
|
A12 : G C1p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C2p_exo anti |
|
A10 : U C3p_exo anti |
|
A11 : C O4p_exo anti |
|
A12 : G C2p_exo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : C O4p_exo anti |
|
A12 : G O4p_endo anti |
|
A13 : C C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A17 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A16 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A14 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A9 : C-C O2P/Bh adjacent_5p pairing |
|
|
