|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C4p_exo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C2p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C4p_exo anti |
|
A32 : A C2p_endo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward pairing |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A12 : A-G O2'/C8 adjacent_5p pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A19-A20 : A-G O2P/Hh adjacent_5p upward pairing |
|
A31-A32 : U-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : G C1p_exo syn |
|
A13 : A C2p_endo anti |
|
A14 : G C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C4p_exo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C2p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_exo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward pairing |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A10-A27 : outward |
|
A18-A22 : outward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A32 : C-A Ss/Wh O2'/Ww pairing parallel trans one_hbond 76 |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A13 : G-A O2'/Ss adjacent_5p pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A19-A20 : A-G O2P/Hh adjacent_5p upward pairing |
|
A30-A31 : A-U O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C4p_exo anti |
|
A19 : A C3p_exo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : G C4p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C2p_endo syn |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward pairing |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A9-A28 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A32 : C-A O2'/Ww pairing |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A13 : G-A O2'/Ss adjacent_5p pairing |
|
A12-A14 : G-G Ww/O2' pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p upward pairing |
|
A13-A26 : A-G Wh/Ss Ww/O2' pairing parallel cis one_hbond |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Ws/O2' pairing |
|
A14-A27 : G-G Ws/O2P pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_exo anti |
|
A19 : A C4p_exo anti |
|
A20 : G C4p_exo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A8-A29 : outward |
|
A9-A28 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Wh/Ss Ww/O2' pairing parallel trans one_hbond |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A21 : G-A O2'/Bh pairing |
|
A20-A21 : G-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C4p_exo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C2p_exo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A11-A26 : outward |
|
A18-A20 : upward pairing |
|
A18-A22 : outward |
|
Number of stackings = 28 |
|
Number of adjacent stackings = 24 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A32 : C-A O2'/Ww pairing |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh upward pairing |
|
A19-A20 : A-G O2P/Hh adjacent_5p pairing |
|
A31-A32 : U-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C2p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C2p_endo anti |
|
A32 : A C3p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A8-A29 : outward |
|
A9-A28 : outward |
|
A18-A22 : outward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A30-A31 : A-U O2'/Hh adjacent_5p pairing |
|
A31-A32 : U-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C3p_exo syn |
|
A13 : A C2p_endo anti |
|
A14 : G C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C2p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C2p_endo anti |
|
A32 : A C3p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A8-A29 : outward |
|
A18-A22 : outward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A13 : G-A O2'/Ss adjacent_5p pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A30-A31 : A-U O2'/Hh adjacent_5p pairing |
|
A31-A32 : U-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C3p_exo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C4p_exo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C2p_exo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A9-A28 : outward |
|
A11-A26 : outward |
|
A18-A20 : upward pairing |
|
A18-A22 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A14 : G-G Hh/O2' pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh upward pairing |
|
A19-A20 : A-G O2P/Hh adjacent_5p pairing |
|
A31-A32 : U-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo syn |
|
A13 : A C3p_exo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C4p_exo anti |
|
A19 : A C4p_exo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C3p_exo syn |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward pairing |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A9-A28 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A14 : G-G Hh/O2' pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Wh/Ss pairing parallel trans one_hbond |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A19-A20 : A-G O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C4p_exo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 28 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A27 : G-G Hh/O2' pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
A30-A32 : A-A O2'/Hh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C2p_exo anti |
|
A12 : G C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C2p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C2p_exo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C3p_exo syn |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A7-A30 : outward |
|
A9-A28 : outward |
|
A11-A26 : outward |
|
A18-A22 : outward |
|
Number of stackings = 27 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : A C2p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : C C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : G C1p_exo syn |
|
A13 : A C2p_endo anti |
|
A14 : G C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : A C3p_endo anti |
|
A20 : G C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : A C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : C C3p_exo anti |
|
A26 : G C2p_exo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : A C3p_endo anti |
|
A31 : U C4p_exo anti |
|
A32 : A C4p_exo anti |
|
A33 : U C3p_endo anti |
|
A34 : C C3p_endo anti |
|
A35 : A C3p_endo anti |
|
A36 : C C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A31-A32 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A33-A34 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A35 : outward |
|
A7-A30 : outward |
|
A18-A22 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A35 : U-A Ww/Ww pairing antiparallel cis XX |
|
A5-A34 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A10-A26 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A13 : G-A O2'/Ss adjacent_5p pairing |
|
A13-A14 : A-G O2'/Hh adjacent_5p pairing |
|
A13-A26 : A-G Ww/O2' pairing |
|
A14-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A26 : G-G Bs/O2' pairing |
|
A15-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A23 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : G-G O2'/Hh pairing |
|
|
