|
Residue conformations |
|
A68 : G C3p_endo anti |
|
A69 : G C3p_endo anti |
|
A70 : C C3p_endo anti |
|
A71 : C C3p_endo anti |
|
A72 : G C3p_endo anti |
|
A73 : A C2p_exo anti |
|
A74 : U C3p_endo anti |
|
A75 : G C3p_endo anti |
|
A76 : G C3p_endo anti |
|
A77 : U C3p_endo anti |
|
A78 : A C3p_endo anti |
|
A79 : G C3p_endo anti |
|
A80 : U C3p_endo anti |
|
A81 : G C3p_endo anti |
|
A82 : U C3p_endo anti |
|
A83 : G C3p_endo anti |
|
A84 : G C3p_endo anti |
|
A85 : G C3p_endo anti |
|
A86 : G C3p_endo anti |
|
A87 : U C4p_exo anti |
|
A88 : C C2p_endo anti |
|
B89 : U C3p_endo anti |
|
B90 : C C2p_exo anti |
|
B91 : C C3p_endo anti |
|
B92 : C C3p_endo anti |
|
B93 : C C3p_endo anti |
|
B94 : A C3p_endo anti |
|
B95 : U C3p_endo anti |
|
B96 : G C3p_endo anti |
|
B97 : C C3p_endo anti |
|
B98 : G C3p_endo anti |
|
B99 : A C2p_exo anti |
|
B100 : G C3p_endo anti |
|
B101 : A C2p_exo anti |
|
B102 : G C3p_endo anti |
|
B103 : U C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : G C3p_endo anti |
|
B106 : G C3p_endo anti |
|
B107 : C C3p_endo anti |
|
B108 : C C3p_endo anti |
|
Adjacent stackings |
|
A68-A69 : adjacent_5p upward |
|
A69-A70 : adjacent_5p upward |
|
A71-A72 : adjacent_5p upward |
|
A73-A74 : adjacent_5p upward |
|
A74-A75 : adjacent_5p upward |
|
A75-A76 : adjacent_5p upward |
|
A76-A77 : adjacent_5p upward |
|
A77-A78 : adjacent_5p upward |
|
A78-A79 : adjacent_5p upward |
|
A79-A80 : adjacent_5p upward |
|
A81-A82 : adjacent_5p upward |
|
A82-A83 : adjacent_5p upward |
|
A83-A84 : adjacent_5p upward |
|
A84-A85 : adjacent_5p upward |
|
A85-A86 : adjacent_5p upward |
|
B93-B94 : adjacent_5p upward |
|
B94-B95 : adjacent_5p upward |
|
B96-B97 : adjacent_5p upward |
|
B97-B98 : adjacent_5p upward |
|
B99-B100 : adjacent_5p upward |
|
B100-B101 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
B106-B107 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A73-B104 : outward |
|
A78-B99 : outward |
|
A81-B96 : outward |
|
A83-B94 : outward |
|
Number of stackings = 31 |
|
Number of adjacent stackings = 27 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A68-B108 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A69-B107 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A70-B106 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A71-B105 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A72-B102 : G-G Hh/O2P pairing |
|
A72-B103 : G-U Ww/O2P Bs/O2P pairing |
|
A72-B104 : G-A Ss/Hh pairing antiparallel trans XI |
|
A73-B103 : A-U Hh/Ws pairing antiparallel trans XXIV |
|
A74-B102 : U-G Hh/Ww pairing antiparallel trans one_hbond 91 |
|
A75-B101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64 |
|
A76-B100 : G-G Ww/Bh pairing antiparallel trans 115 |
|
A77-B99 : U-A Ws/Hh pairing antiparallel trans XXIV |
|
A78-B98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI |
|
A79-B97 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A80-B96 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A81-B95 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A82-B94 : U-A Ww/Ww pairing antiparallel cis XX |
|
A83-B93 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A84-B92 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A85-B91 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A86-B90 : G-C Bs/Ww pairing antiparallel cis 128 |
|
B89-B90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing |
|
|
