|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_exo anti |
|
A10 : A C4p_exo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C3p_exo anti |
|
A14 : A C4p_exo anti |
|
A15 : C C2p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C1p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A8-A10 : G-A O2'/Hh pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A9-A16 : A-U Bs/Ss pairing parallel trans one_hbond |
|
A10-A15 : A-C O2'/Bh pairing |
|
A10-A17 : A-G Bs/Ss Ww/O2' pairing parallel trans one_hbond |
|
A11-A12 : G-A O2'/Hh adjacent_5p pairing |
|
A11-A13 : G-A O2P/Bh O2P/Hh pairing |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh Bs/O2P upward pairing |
|
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond |
|
A12-A34 : A-G O2'/Bs Bh/O2' Hh/O2' upward pairing |
|
A15-A16 : C-U O2'/Hh adjacent_5p upward pairing |
|
A17-A34 : G-G Ww/Hh pairing parallel cis one_hbond |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C2p_exo anti |
|
A9 : A C3p_exo anti |
|
A10 : A O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C3p_exo anti |
|
A14 : A O4p_endo anti |
|
A15 : C O4p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C1p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A8-A10 : G-A O2'/Hh pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A9-A16 : A-U Bs/Ss pairing antiparallel trans one_hbond |
|
A10-A15 : A-C O2'/Bh pairing |
|
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond |
|
A11-A14 : G-A O2P/Bh pairing |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh Bs/O2P upward pairing |
|
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond |
|
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing |
|
A17-A34 : G-G Ww/Hh pairing parallel cis VI |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C3p_exo anti |
|
A14 : A O4p_endo anti |
|
A15 : C O4p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C2p_exo anti |
|
A33 : A C1p_endo anti |
|
A34 : G C3p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A8-A10 : G-A O2'/Hh pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A9-A16 : A-U Bs/Ss pairing parallel trans one_hbond |
|
A10-A15 : A-C O2'/Ww O2'/Bh pairing |
|
A10-A16 : A-U O2'/Ww pairing |
|
A10-A17 : A-G Bs/Ss Ww/O2' pairing parallel trans one_hbond |
|
A11-A12 : G-A Ss/Hw adjacent_5p pairing antiparallel cis one_hbond |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh upward pairing |
|
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond |
|
A12-A34 : A-G O2'/Bs upward pairing |
|
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C2p_exo anti |
|
A10 : A C4p_exo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C4p_exo anti |
|
A14 : A O4p_endo anti |
|
A15 : C C2p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : U C2p_exo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C2p_endo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 8 |
|
Number of adjacent stackings = 6 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans one_hbond |
|
A8-A9 : G-A O2'/Bh O2'/Hh adjacent_5p pairing |
|
A8-A10 : G-A O2'/Hh Hh/O2P pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A10-A15 : A-C O2'/Bh pairing |
|
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond |
|
A11-A13 : G-A O2P/Bh O2P/Hh pairing |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh upward pairing |
|
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing |
|
A14-A34 : A-G O2P/Ww pairing |
|
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C2p_exo anti |
|
A9 : A C2p_exo anti |
|
A10 : A C2p_exo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A O4p_endo anti |
|
A14 : A O4p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : U C3p_endo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C2p_endo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p inward pairing |
|
A7-A8 : adjacent_5p outward pairing |
|
A9-A10 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A7 : G-G O2'/Hh adjacent_5p inward pairing |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-G O2'/Hh adjacent_5p outward pairing |
|
A9-A14 : A-A O2'/Bh pairing |
|
A11-A34 : G-G Bs/O2' pairing |
|
A11-A35 : G-C O2'/Bh upward pairing |
|
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing |
|
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G C4p_exo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C2p_exo anti |
|
A9 : A C2p_endo anti |
|
A10 : A C4p_exo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A O4p_endo anti |
|
A14 : A C4p_exo anti |
|
A15 : C C2p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C1p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p inward |
|
A7-A8 : adjacent_5p outward pairing |
|
A9-A10 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward |
|
A12-A34 : upward pairing |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-G O2'/Hh adjacent_5p outward pairing |
|
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A10-A14 : A-A O2P/Bh pairing |
|
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond |
|
A11-A13 : G-A O2P/Hh pairing |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A12-A34 : A-G O2'/Bs Bh/O2' Hh/O2' upward pairing |
|
A17-A34 : G-G Ww/Hh pairing parallel cis one_hbond |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G C2p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G O4p_endo anti |
|
A9 : A C2p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C2p_exo anti |
|
A14 : A C2p_exo anti |
|
A15 : C C4p_exo anti |
|
A16 : U O4p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C2p_exo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C3p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward pairing |
|
A7-A8 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 7 |
|
Number of adjacent stackings = 5 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A7 : G-G O2'/C8 adjacent_5p upward pairing |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII |
|
A8-A10 : G-A C8/O2P pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A9-A10 : A-A O2'/Hh O2'/C8 C8/O2P adjacent_5p pairing |
|
A9-A16 : A-U Ww/O2' pairing |
|
A10-A17 : A-G Ww/O2' Bh/O2' pairing |
|
A11-A12 : G-A Ss/Hw O2'/Hh adjacent_5p pairing antiparallel cis one_hbond |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh upward pairing |
|
A12-A34 : A-G O2'/Ww O2'/Bs upward pairing |
|
A13-A14 : A-A O2P/Hh adjacent_5p pairing |
|
A14-A17 : A-G Wh/Wh pairing parallel cis one_hbond 66 |
|
A14-A34 : A-G Wh/Wh pairing parallel cis one_hbond 66 |
|
A16-A17 : U-G O2P/Hh adjacent_5p pairing |
|
A17-A34 : G-G Ww/Hh pairing parallel cis VI |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A6 : G O4p_endo anti |
|
A7 : G O4p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_exo anti |
|
A10 : A C4p_exo anti |
|
A11 : G O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C4p_endo anti |
|
A14 : A O4p_endo anti |
|
A15 : C C1p_exo anti |
|
A16 : U C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : U C2p_exo anti |
|
A33 : A C2p_exo anti |
|
A34 : G C3p_exo syn |
|
A35 : C C2p_exo anti |
|
A41 : AMP |
|
Adjacent stackings |
|
A6-A7 : adjacent_5p upward pairing |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p outward pairing |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A33-A34 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
A11-A35 : upward pairing |
|
A12-A34 : upward pairing |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A6-A7 : G-G O2'/C8 adjacent_5p upward pairing |
|
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A11 : G-G Ww/Hh pairing antiparallel trans |
|
A8-A10 : G-A Hh/O2P pairing |
|
A8-A11 : G-G Ww/O2P pairing |
|
A9-A10 : A-A O2'/Hh adjacent_5p outward pairing |
|
A9-A15 : A-C Hw/Ww pairing parallel trans one_hbond |
|
A10-A17 : A-G Ww/O2' pairing |
|
A11-A12 : G-A Ss/Hw O2'/Hh adjacent_5p pairing parallel cis one_hbond |
|
A11-A34 : G-G Bs/O2' Ss/O2' pairing |
|
A11-A35 : G-C O2'/Bh upward pairing |
|
A12-A13 : A-A O2'/Hh adjacent_5p pairing |
|
A12-A34 : A-G O2'/Bs upward pairing |
|
A14-A15 : A-C O2'/Hh adjacent_5p pairing |
|
A17-A34 : G-G Ww/Hh pairing parallel cis VI |
|
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX |
|
|
