|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C4p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C2p_exo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C4p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C2p_exo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A C4p_exo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C3p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A C4p_exo anti |
|
B21 : A C3p_endo anti |
|
B22 : G C2p_exo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
B20-B21 : A-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C2p_exo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A O4p_endo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C2p_exo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C4p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C4p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C2p_exo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C2p_exo anti |
|
B20 : A C3p_endo anti |
|
B21 : A C2p_exo anti |
|
B22 : G C3p_endo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
B15 : G C3p_endo syn |
|
B16 : G C3p_endo anti |
|
B17 : G C3p_endo anti |
|
B18 : U C3p_endo anti |
|
B19 : G C3p_endo anti |
|
B20 : A C4p_exo anti |
|
B21 : A C4p_exo anti |
|
B22 : G C2p_exo anti |
|
B23 : U C3p_endo anti |
|
B24 : C C3p_endo anti |
|
B25 : G C3p_endo anti |
|
B26 : C C1p_exo anti |
|
B27 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p outward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B24-B25 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-B25 : outward |
|
A7-B22 : outward |
|
A9-B19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-B19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-B18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B15 : U-G Bs/Ww pairing parallel trans 87 |
|
|
