|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G O4p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C O4p_endo anti |
|
A2 : G C1p_exo anti |
|
A3 : C O4p_endo anti |
|
A4 : G O4p_endo anti |
|
A5 : T O4p_endo anti |
|
A6 : TSP |
|
A7 : TCP |
|
A8 : T O4p_endo anti |
|
A9 : G O4p_endo anti |
|
A10 : C O4p_endo anti |
|
A11 : G O4p_endo anti |
|
A12 : C O4p_endo anti |
|
B13 : G C4p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : C C3p_endo anti |
|
B17 : A C3p_endo anti |
|
B18 : A C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : A C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : G C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : G C4p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B24 : outward |
|
A4-B22 : outward |
|
A9-B17 : outward |
|
A11-B15 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B20 : T-A Ww/Ww pairing antiparallel cis |
|
A8-B17 : T-A Ww/Ww pairing antiparallel cis |
|
A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
|
