bioCIF / 1afx_MC
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Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G C4p_exo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C3p_endo anti
A10 : A C2p_exo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Bh pairing
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Ww O2'/Bh pairing
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 8
Number of adjacent stackings = 8
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Bh pairing
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C2p_exo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C O4p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 6
Number of adjacent stackings = 6
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Ww O2'/Bh pairing
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C2p_exo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 8
Number of adjacent stackings = 8
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Ww O2'/Bh pairing
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C2p_exo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C3p_endo anti
A10 : A C2p_exo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A O2'/Bh pairing
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C3p_endo anti
A10 : A C2p_exo anti
A11 : C C3p_endo anti
A12 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A8-A9 : adjacent_5p upward
A9-A10 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A7 : U-A O2'/Hh pairing
A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 7
Number of adjacent stackings = 7
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A7 : U-A O2'/Hh pairing
A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46
A6-A7 : G-A O2P/Hh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C2p_endo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 7
Number of adjacent stackings = 7
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A7 : U-A O2'/Hh pairing
A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46
A6-A7 : G-A O2P/Hh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C4p_exo anti
A5 : U C3p_endo anti
A6 : G O4p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C2p_exo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward pairing
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 9
Number of adjacent stackings = 9
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A6 : U-G O2P/Ww adjacent_5p inward pairing
A5-A7 : U-A O2'/Hh pairing
A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C3p_exo anti
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C O4p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward pairing
A7-A8 : adjacent_5p upward pairing
A8-A9 : adjacent_5p upward
A9-A10 : adjacent_5p upward pairing
A10-A11 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 8
Number of adjacent stackings = 8
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A6 : U-G O2'/C8 adjacent_5p inward pairing
A5-A8 : U-A O2'/Ww O2'/Bh pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing
A7-A9 : A-C Ss/O2P pairing
A9-A10 : C-A O2'/C8 adjacent_5p upward pairing
Residue conformations -------------------------------------------
A1 : G O4p_exo anti
A2 : G C3p_endo anti
A3 : U C3p_endo anti
A4 : G C3p_endo anti
A5 : U C3p_endo anti
A6 : G C3p_endo syn
A7 : A C3p_exo syn
A8 : A C2p_endo syn
A9 : C C4p_exo anti
A10 : A C3p_endo anti
A11 : C C3p_endo anti
A12 : C C4p_exo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A3-A4 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p inward
A8-A9 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A11-A12 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 7
Number of adjacent stackings = 7
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX
A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond
A6-A7 : G-A O2P/Bh adjacent_5p pairing
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing
A9-A10 : C-A O2'/C8 adjacent_5p pairing