bioCIF / 1aju_MC
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Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A30-A34 : inward pairing
A30-A36 : outward
Number of stackings = 19
Number of adjacent stackings = 16
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A25 : A-U O2'/Hh pairing
A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A34 : C-G O2'/Ss O2'/C8 inward pairing
A34-A35 : G-A O2'/C8 adjacent_5p pairing
A38-A47 : U-ARG pairing one_hbond
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A21-A42 : outward
Number of stackings = 17
Number of adjacent stackings = 15
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A23-A27 : U-A Ws/Hh pairing parallel cis one_hbond
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A31-A34 : U-G O2P/Bs pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C2p_exo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A19-A44 : outward
A20-A43 : outward
A30-A36 : outward
Number of stackings = 19
Number of adjacent stackings = 16
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond
A21-A25 : G-U O2'/Hh Ss/O2' pairing
A21-A26 : G-G Bs/O2P pairing
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A31-A34 : U-G O2P/Hh pairing
A32-A34 : G-G O2'/Ww pairing
A33-A34 : G-G O2'/Bs O2P/Ss adjacent_5p pairing
A34-A35 : G-A O2P/Bh adjacent_5p pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C2p_exo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 16
Number of adjacent stackings = 15
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond
A30-A34 : C-G O2'/Hh pairing
A31-A34 : U-G O2P/Ww pairing
A32-A33 : G-G O2'/Hh adjacent_5p pairing
A32-A34 : G-G O2'/Ww O2'/Bs pairing
A34-A36 : G-G O2'/Hh O2'/C8 pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C2p_exo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A21-A42 : outward
A30-A36 : outward
Number of stackings = 20
Number of adjacent stackings = 17
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A23-A27 : U-A Ww/Hh pairing parallel cis one_hbond
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A26-A40 : G-U Bs/O2' pairing
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A34 : C-G O2'/Ww pairing
A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109
A33-A34 : G-G O2P/Bs adjacent_5p pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo anti
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A30-A36 : outward
Number of stackings = 17
Number of adjacent stackings = 15
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A23-A27 : U-A Ww/Hh pairing parallel cis XXIII
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis one_hbond
A28-A37 : G-C Ww/Ww pairing antiparallel cis
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A34 : C-G O2'/Hh pairing
A34-A36 : G-G Ww/O2' pairing
A34-A37 : G-C Ww/O2P pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_exo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 17
Number of adjacent stackings = 16
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A26-A40 : G-U Bs/O2' pairing
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A32 : C-G O2'/Hh pairing
A32-A34 : G-G Bs/O2P Ss/O2P pairing
A34-A36 : G-G Ss/O2' pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C2p_exo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C2p_exo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A32-A33 : adjacent_5p outward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 17
Number of adjacent stackings = 16
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A26-A40 : G-U Bs/O2' pairing
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C3p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A30-A36 : outward
Number of stackings = 19
Number of adjacent stackings = 17
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A23-A27 : U-A Ww/Hh pairing parallel cis one_hbond
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A34 : C-G O2'/Ww pairing
A30-A35 : C-A O2'/Bh pairing
A32-A33 : G-G O2'/Hh adjacent_5p pairing
A33-A34 : G-G O2P/Bs adjacent_5p pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C3p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_endo anti
A35 : A C2p_exo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A32-A33 : adjacent_5p outward pairing
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A34-A36 : outward
Number of stackings = 19
Number of adjacent stackings = 17
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A23-A27 : U-A Ws/Hh pairing parallel cis one_hbond
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis
A29-A30 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A30-A37 : C-C Ww/O2' Bh/O2' pairing
A32-A33 : G-G O2P/Bs adjacent_5p outward pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C2p_exo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C2p_exo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A17-A46 : outward
A20-A43 : outward
A30-A36 : outward
Number of stackings = 20
Number of adjacent stackings = 17
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A33-A34 : G-G O2'/Ss adjacent_5p pairing
A34-A36 : G-G Ww/O2' Ss/O2' pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C2p_exo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 17
Number of adjacent stackings = 16
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A34-A36 : G-G O2'/C8 pairing
A35-A36 : A-G O2P/Hh adjacent_5p pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo anti
A35 : A C2p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 16
Number of adjacent stackings = 15
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A45 : G-C Wh/Wh pairing antiparallel cis one_hbond
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
A34-A35 : G-A O2'/C8 adjacent_5p pairing
A38-A47 : U-ARG pairing one_hbond
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C2p_exo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C2p_exo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 15
Number of adjacent stackings = 14
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C2p_exo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A37-A38 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A19-A44 : outward
A20-A43 : outward
A23-A26 : downward
Number of stackings = 21
Number of adjacent stackings = 18
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A30 : G-C Ss/Hw O2'/Bh pairing antiparallel trans one_hbond
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A30 : C-C O2'/Hh adjacent_5p pairing
A29-A36 : C-G Ww/Ww pairing antiparallel cis
A30-A36 : C-G O2'/Bs pairing
A31-A34 : U-G O2P/Hh pairing
A32-A34 : G-G O2P/Bs O2P/Ss O2P/Bs pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C2p_exo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo anti
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A29-A30 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A22-A26 : upward
Number of stackings = 19
Number of adjacent stackings = 17
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis
A31-A34 : U-G Hh/Hh O2P/Ss O2P/C8 pairing parallel trans one_hbond
A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond
A32-A34 : G-G O2'/Ww O2'/Bs pairing
A33-A34 : G-G O2'/Bs O2'/Ss adjacent_5p pairing
A33-A35 : G-A Ss/Wh O2'/Bh pairing parallel trans one_hbond
A34-A36 : G-G O2'/C8 pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C3p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C2p_exo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A31-A34 : outward
Number of stackings = 16
Number of adjacent stackings = 14
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A30 : C-C O2'/Hh adjacent_5p pairing
A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond
A30-A36 : C-G O2'/Bs pairing
A33-A34 : G-G O2P/Bs adjacent_5p pairing
A34-A36 : G-G O2'/Ss O2'/C8 pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C2p_exo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo anti
A35 : A C2p_exo syn
A36 : G C3p_endo anti
A37 : C C2p_exo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C2p_exo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A19-A44 : outward
A20-A43 : outward
Number of stackings = 17
Number of adjacent stackings = 15
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A26-A40 : G-U Bs/O2' pairing
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo anti
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C3p_endo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
A45-A46 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
A21-A42 : outward
Number of stackings = 15
Number of adjacent stackings = 13
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A26-A40 : G-U Bs/O2' pairing
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A30 : C-C O2'/Hh adjacent_5p pairing
A29-A36 : C-G Ww/Ww pairing antiparallel cis
A30-A36 : C-G O2'/Bs pairing
Residue conformations -------------------------------------------
A16 : G C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_endo syn
A31 : U C2p_endo anti
A32 : G C2p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_endo syn
A35 : A C2p_exo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C2p_exo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : G C2p_exo anti
A45 : C C3p_endo anti
A46 : C C3p_endo anti
A47 : ARG
Adjacent stackings ----------------------------------------------
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A20-A21 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A26-A27 : adjacent_5p upward
A27-A28 : adjacent_5p upward
A28-A29 : adjacent_5p upward
A36-A37 : adjacent_5p upward
A38-A39 : adjacent_5p upward
A39-A40 : adjacent_5p upward
A40-A41 : adjacent_5p upward
A41-A42 : adjacent_5p upward
A42-A43 : adjacent_5p upward
A43-A44 : adjacent_5p upward
A44-A45 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward
Number of stackings = 18
Number of adjacent stackings = 17
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
A25-A42 : U-U Hh/O2' pairing
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
A29-A30 : C-C O2'/Hh adjacent_5p pairing
A29-A36 : C-G Ww/Ww pairing antiparallel cis
A30-A31 : C-U O2P/Ww adjacent_5p pairing
A30-A36 : C-G O2'/Bs pairing
A34-A35 : G-A O2P/Hh adjacent_5p pairing