|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 26 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C2p_exo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C2p_exo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C2p_exo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : C C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A C2p_exo anti |
|
A7 : U C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : G C3p_endo anti |
|
B1 : C C3p_endo anti |
|
B2 : G C3p_endo anti |
|
B3 : C C3p_endo anti |
|
B4 : A C3p_endo anti |
|
B5 : A C3p_endo anti |
|
B6 : A C3p_endo anti |
|
B7 : U C3p_endo anti |
|
B8 : U C3p_endo anti |
|
B9 : U C3p_endo anti |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B4-B5 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B6-B7 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-B12 : outward |
|
A4-B10 : outward |
|
A10-B4 : outward |
|
A12-B2 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX |
|
|
