|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C1p_exo anti |
|
N19 : C C3p_endo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C3p_endo anti |
|
N26 : G C4p_exo anti |
|
N27 : A C4p_exo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C3p_endo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C2p_exo syn |
|
N35 : A C2p_exo anti |
|
N36 : G C3p_endo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C3p_endo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p outward pairing |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N18-N45 : inward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N18-N19 : G-C O2'/Hh adjacent_5p outward pairing |
|
N18-N43 : G-G Ws/Wh pairing parallel trans one_hbond |
|
N18-N44 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N34 : C-G Ss/Ws pairing antiparallel cis one_hbond 127 |
|
N33-N34 : G-G O2P/Bs adjacent_5p pairing |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C3p_endo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C1p_exo anti |
|
N26 : G C4p_exo anti |
|
N27 : A C3p_endo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C4p_endo anti |
|
N32 : G C3p_endo anti |
|
N33 : G C2p_endo anti |
|
N34 : G C2p_exo anti |
|
N35 : A C2p_endo anti |
|
N36 : G C3p_endo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C3p_endo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C4p_exo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward pairing |
|
N38-N39 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N44 : G-C Bh/Wh pairing antiparallel cis one_hbond |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N30 : C-C O2P/Bh adjacent_5p upward pairing |
|
N29-N36 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
N33-N34 : G-G O2P/Bs adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C2p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C4p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C2p_exo anti |
|
N32 : G C3p_exo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C3p_endo syn |
|
N35 : A C1p_endo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C4p_exo anti |
|
N45 : C C2p_exo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis |
|
N30-N34 : C-G Ss/Ws O2'/Bs pairing antiparallel cis one_hbond 127 |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N35-N36 : A-G Ww/O2' adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C2p_exo anti |
|
N22 : A C3p_endo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C1p_exo anti |
|
N26 : G C4p_exo anti |
|
N27 : A C4p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C3p_exo anti |
|
N32 : G O4p_endo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C3p_endo syn |
|
N35 : A C3p_endo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N33-N34 : G-G O2'/Ss adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C4p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C2p_exo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C3p_endo anti |
|
N32 : G C3p_endo anti |
|
N33 : G C3p_exo anti |
|
N34 : G C2p_exo syn |
|
N35 : A C3p_exo anti |
|
N36 : G C3p_endo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N18-N45 : outward |
|
N20-N43 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N25 : A-U Ss/Hh pairing antiparallel trans one_hbond |
|
N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis |
|
N32-N33 : G-G O2'/Hh adjacent_5p pairing |
|
N34-N35 : G-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo syn |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C3p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C2p_endo anti |
|
N32 : G C3p_exo anti |
|
N33 : G C2p_endo anti |
|
N34 : G C2p_exo anti |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C1p_endo anti |
|
N45 : C O4p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p downward |
|
N18-N19 : adjacent_5p outward pairing |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N34-N36 : upward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N18-N19 : G-C O2'/Hh adjacent_5p outward pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' pairing |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
N26-N39 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis |
|
N30-N34 : C-G Bs/Ww O2'/Bs pairing antiparallel cis one_hbond 127 |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N35-N36 : A-G Ww/O2' adjacent_5p pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C2p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C1p_exo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C2p_exo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C2p_endo anti |
|
N34 : G C1p_endo anti |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N31 : C-U O2'/Hh adjacent_5p pairing |
|
N32-N33 : G-G O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C3p_endo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C2p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C3p_endo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U O4p_endo anti |
|
N32 : G C3p_exo anti |
|
N33 : G C3p_endo anti |
|
N34 : G C2p_exo anti |
|
N35 : A C2p_endo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C4p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis 130 |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis |
|
N30-N34 : C-G O2'/Bs pairing |
|
N31-N36 : U-G Hw/Sw pairing parallel trans one_hbond 89 |
|
N32-N33 : G-G O2P/Ss adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C3p_endo syn |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C2p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C1p_exo anti |
|
N32 : G C4p_exo anti |
|
N33 : G C3p_exo anti |
|
N34 : G C1p_endo anti |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C O4p_endo anti |
|
N42 : U C4p_exo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C4p_exo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p downward |
|
N18-N19 : adjacent_5p outward pairing |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N34-N36 : upward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N18-N19 : G-C O2'/Hh adjacent_5p outward pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' Ss/O2' pairing |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N33-N34 : G-G O2P/Ss adjacent_5p pairing |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C3p_endo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C1p_exo anti |
|
N26 : G C4p_exo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C3p_exo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C3p_exo anti |
|
N34 : G C1p_endo syn |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 |
|
N31-N32 : U-G O2'/Hh adjacent_5p pairing |
|
N34-N35 : G-A O2'/C8 adjacent_5p pairing |
|
N34-N37 : G-C Hh/O2P pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C4p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C1p_exo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C2p_exo anti |
|
N32 : G C1p_exo anti |
|
N33 : G C3p_endo anti |
|
N34 : G C2p_exo anti |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
N34-N36 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N31-N32 : U-G O2'/C8 adjacent_5p pairing |
|
N33-N34 : G-G Sw/Wh O2'/C8 adjacent_5p pairing antiparallel cis one_hbond |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C2p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C3p_endo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C4p_endo anti |
|
N32 : G C3p_exo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C3p_endo syn |
|
N35 : A C2p_endo anti |
|
N36 : G C3p_endo anti |
|
N37 : C C2p_exo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C2p_exo anti |
|
N45 : C O4p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N19 : G-C O2'/Hh adjacent_5p pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' pairing |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N25 : A-U O2'/Hh O2'/Ww pairing |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
N33-N34 : G-G O2'/C8 adjacent_5p pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C3p_endo syn |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C3p_endo anti |
|
N32 : G C1p_endo syn |
|
N33 : G C2p_endo anti |
|
N34 : G C1p_endo syn |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N23-N34 : U-G Ww/Hw pairing antiparallel trans one_hbond |
|
N26-N39 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N33-N35 : G-A O2P/Bh pairing |
|
N34-N35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C2p_exo anti |
|
N19 : C C3p_endo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C4p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U O4p_endo anti |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G O4p_endo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C3p_endo anti |
|
N32 : G C3p_endo anti |
|
N33 : G C2p_endo anti |
|
N34 : G C2p_exo anti |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N34 : C-G Bs/Ww pairing antiparallel cis 127 |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C4p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C3p_exo syn |
|
N26 : G C4p_exo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C2p_endo anti |
|
N31 : U C2p_exo anti |
|
N32 : G C3p_exo anti |
|
N33 : G C3p_exo syn |
|
N34 : G C2p_exo syn |
|
N35 : A C3p_endo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C1p_endo anti |
|
N45 : C C4p_exo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
N18-N19 : G-C O2'/Hh adjacent_5p pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' pairing |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N34 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N34 : C-G Bs/Ww pairing antiparallel cis 127 |
|
N31-N32 : U-G O2'/Ss adjacent_5p pairing |
|
N32-N33 : G-G Sw/Wh adjacent_5p pairing parallel cis one_hbond 114 |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C2p_endo anti |
|
N26 : G C3p_endo anti |
|
N27 : A C3p_endo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C3p_endo anti |
|
N32 : G C3p_endo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C1p_endo syn |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C3p_endo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C3p_endo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis 130 |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N34 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
N33-N34 : G-G O2P/Bs adjacent_5p pairing |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C3p_endo anti |
|
N26 : G C3p_endo anti |
|
N27 : A C2p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C3p_exo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C3p_exo anti |
|
N34 : G C2p_exo syn |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C1p_endo anti |
|
N45 : C C4p_exo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N18-N19 : adjacent_5p outward pairing |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N19 : G-C O2'/Hh adjacent_5p outward pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' pairing |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis |
|
N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond |
|
N25-N26 : U-G O2'/C8 adjacent_5p pairing |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N34-N36 : G-G Hh/O2P pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C2p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C3p_endo anti |
|
N24 : C C2p_exo anti |
|
N25 : U C1p_endo anti |
|
N26 : G C3p_endo anti |
|
N27 : A C3p_endo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C3p_endo anti |
|
N31 : U C3p_exo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C2p_endo anti |
|
N34 : G C2p_exo syn |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C4p_exo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward pairing |
|
N30-N31 : adjacent_5p upward |
|
N37-N38 : adjacent_5p upward |
|
N38-N39 : adjacent_5p upward |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N20-N43 : outward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N1-N22 : ARG-A pairing one_hbond |
|
N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N25-N41 : U-C Ww/O2' pairing |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N30 : C-C O2P/Bh adjacent_5p upward pairing |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N34 : C-G O2'/Bs pairing |
|
N33-N34 : G-G O2P/Bs adjacent_5p pairing |
|
Residue conformations |
|
N17 : G C3p_endo anti |
|
N18 : G C1p_exo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C2p_exo anti |
|
N21 : G C3p_endo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C3p_exo syn |
|
N26 : G C4p_exo anti |
|
N27 : A C4p_exo anti |
|
N28 : G C4p_exo anti |
|
N29 : C C3p_endo anti |
|
N30 : C C3p_endo anti |
|
N31 : U O4p_endo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C3p_endo anti |
|
N35 : A C2p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C4p_exo anti |
|
N39 : C C2p_exo anti |
|
N40 : U C3p_endo anti |
|
N41 : C C3p_endo anti |
|
N42 : U C2p_exo anti |
|
N43 : G C2p_exo anti |
|
N44 : C C3p_endo anti |
|
N45 : C O4p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p downward |
|
N18-N19 : adjacent_5p outward pairing |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N28-N29 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward pairing |
|
N39-N40 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N43-N44 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
N27-N39 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N18-N19 : G-C O2'/Hh adjacent_5p outward pairing |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N18-N45 : G-C Bs/O2' pairing |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis XX |
|
N23-N33 : U-G O2P/Bs pairing |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N29-N30 : C-C O2P/Bh adjacent_5p upward pairing |
|
N29-N31 : C-U O2P/Ww pairing |
|
N29-N36 : C-G Ww/Ww pairing antiparallel cis |
|
N30-N34 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
N33-N34 : G-G O2'/C8 adjacent_5p pairing |
|
N34-N35 : G-A O2'/Hh adjacent_5p pairing |
|
N35-N36 : A-G Ww/O2' adjacent_5p pairing |
|
N43-N45 : G-C Hh/O2P pairing |
|
N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
N17 : G C2p_exo anti |
|
N18 : G C3p_endo anti |
|
N19 : C C2p_exo anti |
|
N20 : A C3p_endo anti |
|
N21 : G C2p_exo anti |
|
N22 : A C2p_exo anti |
|
N23 : U C2p_exo anti |
|
N24 : C C3p_endo anti |
|
N25 : U C2p_endo syn |
|
N26 : G C4p_exo anti |
|
N27 : A C4p_exo anti |
|
N28 : G C3p_endo anti |
|
N29 : C C2p_exo anti |
|
N30 : C C2p_exo anti |
|
N31 : U C2p_endo anti |
|
N32 : G C2p_exo anti |
|
N33 : G C2p_exo anti |
|
N34 : G C2p_exo syn |
|
N35 : A C3p_exo anti |
|
N36 : G C2p_exo anti |
|
N37 : C C3p_endo anti |
|
N38 : U C3p_endo anti |
|
N39 : C C3p_endo anti |
|
N40 : U C2p_exo anti |
|
N41 : C C3p_endo anti |
|
N42 : U C3p_endo anti |
|
N43 : G C3p_endo anti |
|
N44 : C C2p_exo anti |
|
N45 : C C3p_endo anti |
|
N1 : ARG |
|
Adjacent stackings |
|
N17-N18 : adjacent_5p upward |
|
N18-N19 : adjacent_5p upward |
|
N19-N20 : adjacent_5p upward |
|
N20-N21 : adjacent_5p upward |
|
N21-N22 : adjacent_5p upward |
|
N26-N27 : adjacent_5p upward |
|
N27-N28 : adjacent_5p upward |
|
N29-N30 : adjacent_5p upward |
|
N36-N37 : adjacent_5p upward |
|
N40-N41 : adjacent_5p upward |
|
N41-N42 : adjacent_5p upward |
|
N42-N43 : adjacent_5p upward |
|
N43-N44 : adjacent_5p upward |
|
N44-N45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
N34-N36 : upward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
N17-N45 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 |
|
N18-N44 : G-C Ww/Ww pairing antiparallel cis |
|
N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N20-N42 : A-U Ww/Ww pairing antiparallel cis XX |
|
N21-N41 : G-C Ww/Ww pairing antiparallel cis |
|
N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
N27-N38 : A-U Ww/Ww pairing antiparallel cis XX |
|
N29-N34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
N30-N33 : C-G O2'/Ss O2'/C8 pairing |
|
N33-N34 : G-G O2'/Ss adjacent_5p pairing |
|
|
