|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : C C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_exo anti |
|
A8 : A C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A1-A15 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-A12 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : C-A O2P/Ss O2P/C8 adjacent_5p pairing |
|
A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : C C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : G C2p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 8 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A1-A15 : G-G O2'/Bs pairing |
|
A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-A12 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A10 : G-G Sw/Ss O2'/Bs Bs/O2' pairing parallel cis one_hbond |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : C C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C3p_endo anti |
|
A7 : G C2p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A1-A15 : G-G Bs/Hh pairing antiparallel trans 34 |
|
A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-A12 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : C-A O2P/Hh O2P/Ss adjacent_5p pairing |
|
A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A10 : U-G O2P/Hh adjacent_5p pairing |
|
|
