|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A C2p_exo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C4p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G C4p_exo syn |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C C4p_exo anti |
|
A25 : G C3p_endo anti |
|
A26 : U O4p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C2p_endo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C4p_exo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C2p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward pairing |
|
A27-A28 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A15-A23 : outward |
|
A17-A19 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 22 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hw pairing antiparallel trans one_hbond 63 |
|
A9-A29 : A-A Hw/Hh pairing parallel trans one_hbond |
|
A10-A27 : A-A Bh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Wh/Ws pairing antiparallel cis one_hbond 100 |
|
A12-A25 : A-G Wh/Ss Ww/O2' pairing antiparallel trans one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Bs/Ww pairing parallel trans one_hbond 87 |
|
A26-A27 : U-A O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C4p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : A C2p_exo anti |
|
A9 : A C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C O4p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C4p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G O4p_endo syn |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C C4p_exo anti |
|
A25 : G C3p_endo anti |
|
A26 : U O4p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C1p_exo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A O4p_endo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C2p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward pairing |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A8-A32 : outward |
|
A17-A19 : upward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Bh/Ws pairing antiparallel trans one_hbond |
|
A10-A27 : A-A Wh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Bh/Bs pairing antiparallel cis |
|
A12-A25 : A-G Wh/Ss pairing antiparallel cis one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Ws/Ws pairing parallel trans one_hbond 87 |
|
A18-A20 : U-G O2'/Hh pairing |
|
A26-A27 : U-A O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : C C4p_exo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A C2p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C1p_exo anti |
|
A19 : C C3p_exo anti |
|
A20 : G C4p_exo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C4p_exo anti |
|
A23 : G C3p_endo anti |
|
A24 : C C4p_exo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C2p_endo anti |
|
A30 : U C1p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : A O4p_endo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-C Ww/Wh pairing antiparallel cis one_hbond 71 |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hw pairing antiparallel trans XI |
|
A8-A31 : A-U Bh/Ws pairing antiparallel trans one_hbond |
|
A9-A28 : A-U Bh/O2' pairing |
|
A10-A27 : A-A Wh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Wh/Ws pairing antiparallel cis one_hbond 100 |
|
A12-A25 : A-G Wh/Ss Ww/O2' pairing antiparallel trans one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A19 : U-C O2P/Bh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C2p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C2p_exo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G C4p_exo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C O4p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C2p_exo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C3p_exo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A O4p_endo anti |
|
A33 : C C4p_exo anti |
|
A34 : G C3p_endo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C3p_endo anti |
|
A37 : C C2p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward pairing |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
A17-A19 : upward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Hw/Ws pairing antiparallel trans one_hbond |
|
A9-A28 : A-U Ww/O2' Bh/O2' pairing |
|
A9-A29 : A-A Hh/Hh pairing parallel trans II |
|
A10-A27 : A-A Wh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Bh/Bs pairing antiparallel cis |
|
A12-A25 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Bs/Ww O2'/Ww pairing parallel trans 87 |
|
A18-A20 : U-G O2'/Hh pairing |
|
A26-A27 : U-A O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C2p_exo anti |
|
A8 : A C2p_exo anti |
|
A9 : A O4p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C2p_exo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C3p_exo anti |
|
A20 : G O4p_endo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : U O4p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C3p_exo anti |
|
A30 : U C4p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A O4p_endo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C4p_exo anti |
|
A35 : C C2p_exo anti |
|
A36 : A C4p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A15-A23 : outward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-C Ww/Wh pairing antiparallel cis one_hbond 71 |
|
A7-A32 : G-A Ss/Bh pairing antiparallel trans one_hbond 63 |
|
A9-A29 : A-A Hw/Hh pairing parallel trans one_hbond |
|
A10-A27 : A-A Bh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A12 : C-A O2'/C8 adjacent_5p pairing |
|
A12-A25 : A-G Bh/Ss pairing antiparallel trans one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Ws/Ws pairing parallel trans one_hbond 87 |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C4p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C2p_exo anti |
|
A9 : A O4p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C2p_exo anti |
|
A12 : A C4p_exo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C2p_endo anti |
|
A20 : G O4p_endo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C O4p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C3p_exo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C2p_exo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C3p_endo anti |
|
A37 : C C2p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
A17-A19 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-C Ww/Wh pairing antiparallel cis one_hbond 71 |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Hw/Ws pairing antiparallel trans one_hbond |
|
A9-A10 : A-A O2'/C8 adjacent_5p pairing |
|
A9-A28 : A-U Bh/O2' pairing |
|
A10-A27 : A-A Bh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Wh/Ws pairing antiparallel cis one_hbond 100 |
|
A12-A25 : A-G Hw/Ss pairing antiparallel trans one_hbond |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Ws/Ws pairing parallel trans one_hbond 87 |
|
A27-A28 : A-U O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : G C4p_exo anti |
|
A3 : U C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : C C4p_exo anti |
|
A6 : A C2p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G C4p_exo syn |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C4p_exo anti |
|
A24 : C C4p_exo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C3p_exo anti |
|
A30 : U C1p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hw pairing antiparallel trans XI |
|
A8-A31 : A-U Hh/Ws pairing antiparallel trans XXIV |
|
A9-A29 : A-A Hh/Hh pairing parallel trans one_hbond |
|
A10-A27 : A-A Wh/Ss pairing antiparallel trans one_hbond 40 |
|
A12-A25 : A-G Hh/Ss pairing antiparallel trans XI |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Ws/Ws pairing parallel trans one_hbond 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C O4p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C3p_endo anti |
|
A15 : G C4p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G O4p_endo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C3p_endo anti |
|
A24 : C C4p_exo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C1p_exo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C4p_exo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C2p_exo anti |
|
A34 : G C4p_exo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C4p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A20-A21 : adjacent_5p outward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
A17-A19 : upward |
|
Number of stackings = 25 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-C Ww/Bh pairing antiparallel cis one_hbond 71 |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Hh/Ws pairing antiparallel trans XXIV |
|
A9-A28 : A-U Wh/Ss Bh/O2' pairing antiparallel trans one_hbond |
|
A9-A29 : A-A Hh/Hh pairing parallel trans II |
|
A10-A27 : A-A Wh/Ss pairing antiparallel trans one_hbond 40 |
|
A11-A26 : C-U Wh/Ws pairing antiparallel cis one_hbond 100 |
|
A12-A25 : A-G Wh/Ss pairing antiparallel cis one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A18-A20 : U-G O2'/Hh O2'/C8 pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C2p_exo anti |
|
A9 : A O4p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C2p_exo anti |
|
A18 : U C3p_exo anti |
|
A19 : C C2p_endo anti |
|
A20 : G O4p_endo syn |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C4p_exo anti |
|
A24 : C O4p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : U O4p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C1p_endo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C2p_exo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A35-A36 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A8-A32 : outward |
|
A15-A23 : outward |
|
A17-A19 : upward |
|
Number of stackings = 23 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-A O2'/C8 adjacent_5p pairing |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Bh/Ws pairing antiparallel trans one_hbond |
|
A9-A28 : A-U Wh/Ss pairing antiparallel trans one_hbond |
|
A9-A29 : A-A Hw/Hh pairing parallel trans one_hbond |
|
A10-A27 : A-A Bh/Ss pairing antiparallel trans one_hbond 40 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A17-A20 : U-G Ws/Ws pairing parallel trans one_hbond 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : A C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : A C3p_endo anti |
|
A9 : A O4p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : A C4p_exo anti |
|
A13 : G C3p_endo anti |
|
A14 : C C2p_exo anti |
|
A15 : G C3p_endo anti |
|
A16 : C C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C2p_endo anti |
|
A19 : C C1p_exo anti |
|
A20 : G C4p_exo syn |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : G C4p_exo anti |
|
A24 : C O4p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : U C4p_exo anti |
|
A27 : A C3p_endo anti |
|
A28 : U C3p_endo anti |
|
A29 : A C2p_endo anti |
|
A30 : U C2p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : A C4p_exo anti |
|
A33 : C C3p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : C C3p_endo anti |
|
A36 : A C2p_exo anti |
|
A37 : C C4p_exo anti |
|
A38 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward pairing |
|
A27-A28 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A36 : outward |
|
A6-A34 : outward |
|
A15-A23 : outward |
|
Number of stackings = 24 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A38 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A36 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A35 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A34 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A33 : A-C Ww/Wh pairing antiparallel cis one_hbond 71 |
|
A7-A32 : G-A Ss/Hh pairing antiparallel trans XI |
|
A8-A31 : A-U Hh/Ws pairing antiparallel trans XXIV |
|
A9-A28 : A-U Bh/O2' pairing |
|
A10-A27 : A-A Bh/Ss pairing antiparallel trans one_hbond 40 |
|
A12-A25 : A-G Wh/Ss Ww/O2' pairing antiparallel trans one_hbond 63 |
|
A13-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-A23 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A15-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A26-A27 : U-A O2'/C8 adjacent_5p upward pairing |
|
|
