|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C2p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Ww/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh Ww/O2P pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C2p_endo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C4p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C2p_exo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2'/Hh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A20 : C-C Hw/Ss Bh/O2' pairing parallel trans one_hbond |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh Ww/O2P pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C2p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C1p_endo anti |
|
A15 : A O4p_endo anti |
|
A16 : A C4p_exo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A15 : G-A O2'/Bh pairing |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A O4p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C2p_exo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward pairing |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A10-A16 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A15 : G-A Ws/Hh pairing antiparallel trans one_hbond 54 |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A12-A13 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A O4p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C1p_endo anti |
|
A16 : A O4p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2'/Hh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans one_hbond |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C2p_exo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C1p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C3p_exo anti |
|
A15 : A C4p_exo anti |
|
A16 : A O4p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A10-A16 : outward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Sw/Hh pairing antiparallel trans one_hbond |
|
A11-A13 : U-A O2'/Bh O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C2p_exo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C3p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A O4p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A10-A16 : outward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh Ww/O2P pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C1p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C3p_exo anti |
|
A15 : A C4p_exo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C2p_exo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A O2'/Bh pairing |
|
A10-A15 : G-A Sw/Hh pairing antiparallel trans one_hbond |
|
A11-A12 : U-A O2'/Hh adjacent_5p pairing |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C2p_endo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C1p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C4p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Ww/O2P Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh Ww/O2P pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C1p_exo anti |
|
A13 : A C2p_endo anti |
|
A14 : A C3p_endo anti |
|
A15 : A C2p_exo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2'/Hh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A7 : C-G O2P/Hh adjacent_5p pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-A13 : U-A O2'/Hh pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A O4p_endo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C4p_exo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C4p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C4p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A15 : U-A Ws/Wh pairing antiparallel trans one_hbond 46 |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C4p_exo syn |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C3p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2'/Hh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A7 : C-G O2P/Hh adjacent_5p pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : A O4p_endo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C2p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A O4p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward pairing |
|
A8-A18 : outward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2'/Hh adjacent_5p pairing |
|
A5-A7 : A-G O2'/Hh upward pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A15 : U-A Ws/Wh pairing antiparallel trans one_hbond 46 |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A O2'/Bh pairing |
|
A10-A15 : G-A Sw/Hh pairing antiparallel trans one_hbond |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : A O4p_endo anti |
|
A6 : C C1p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C1p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C4p_exo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A14 : C-A Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A O2'/Bh pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C1p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C2p_exo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Bh O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_exo anti |
|
A6 : C C2p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C1p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A O4p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2P/Bh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : A C1p_exo anti |
|
A6 : C C1p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C2p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward pairing |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Sw/Hh pairing antiparallel trans one_hbond |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : A C3p_exo anti |
|
A6 : C C1p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C4p_exo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A O4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C2p_exo anti |
|
A16 : A C2p_exo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : A-C O2P/Bh adjacent_5p pairing |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
A15-A16 : A-A O2P/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C4p_exo anti |
|
A6 : C C1p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C3p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : A C3p_endo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C4p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
A8-A18 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A15 : C-A Bh/O2P pairing |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A10-A15 : G-A Ss/Hh pairing antiparallel trans XI |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A O2'/Bh Ww/O2P pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C O4p_endo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : U C3p_endo anti |
|
A10 : G C2p_exo anti |
|
A11 : U C3p_endo anti |
|
A12 : A C4p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C3p_exo anti |
|
A15 : A C2p_exo anti |
|
A16 : A C3p_endo anti |
|
A17 : U C2p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : U C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A21 : outward |
|
A5-A7 : upward |
|
Number of stackings = 20 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX |
|
A7-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A9-A16 : U-A Ww/Ww pairing antiparallel cis XX |
|
A10-A14 : G-A Ww/O2P pairing |
|
A11-A13 : U-A O2'/Hh pairing |
|
A11-A14 : U-A Ww/O2P pairing |
|
|
