|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A21 : C-A Ws/Wh pairing antiparallel cis one_hbond 78 |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C2p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
A19-A20 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A21 : C-A Ws/Wh pairing antiparallel cis one_hbond 78 |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A21 : C-A Ws/Wh pairing antiparallel cis one_hbond 78 |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C2p_endo anti |
|
A21 : A C4p_exo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 19 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A21 : A-A Ss/Hw O2'/Bh pairing antiparallel trans one_hbond 41 |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C4p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
A13-A15 : U-G O2'/Hh pairing |
|
A19-A20 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C2p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
A19-A20 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 22 |
|
Number of adjacent stackings = 18 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : A C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : U C1p_exo anti |
|
A14 : C C2p_endo anti |
|
A15 : G C4p_exo syn |
|
A16 : G C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : A C3p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : G C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : C O4p_endo anti |
|
A28 : GE1 |
|
A29 : GE2 |
|
A30 : GE3 |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A15-A16 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A25 : outward |
|
A7-A22 : outward |
|
A9-A19 : outward |
|
A12-A14 : upward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A1-A27 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A25 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A11-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A12-A15 : U-G Bs/Ww pairing parallel trans 87 |
|
|
