|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C2p_exo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C2p_exo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C2p_exo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_exo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B101 : C-G Ww/Ws pairing parallel trans one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C2p_exo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C2p_exo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-C O2P/Bh adjacent_5p pairing |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C2p_exo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis |
|
A7-A8 : G-C O2P/Bh adjacent_5p pairing |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo syn |
|
A2 : C C2p_exo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_exo anti |
|
Adjacent stackings |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-C O2P/Bh adjacent_5p pairing |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C2p_exo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B106-B107 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C1p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
B107-B108 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-B108 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C1p_endo syn |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C2p_exo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C2p_exo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward pairing |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-C O2P/Bh adjacent_5p upward pairing |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C2p_exo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward pairing |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
B107-B108 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-B108 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ws pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A8 : G-C O2P/Bh adjacent_5p upward pairing |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C3p_endo anti |
|
B108 : C C3p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A1-B108 : G-C Ws/Ww pairing antiparallel cis one_hbond |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C3p_endo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
B107-B108 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C2p_exo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C3p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo syn |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C2p_exo anti |
|
A8 : C C2p_exo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C1p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p inward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
B106-B107 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C1p_endo syn |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C2p_exo anti |
|
A2 : C C3p_endo anti |
|
A3 : A C3p_endo anti |
|
A4 : G C2p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
B101 : G C2p_exo anti |
|
B102 : C C3p_endo anti |
|
B103 : C C3p_endo anti |
|
B104 : A C3p_endo anti |
|
B105 : C C3p_endo anti |
|
B106 : T C3p_endo anti |
|
B107 : G C2p_endo anti |
|
B108 : C C2p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
B101-B102 : adjacent_5p upward |
|
B102-B103 : adjacent_5p upward |
|
B103-B104 : adjacent_5p upward |
|
B104-B105 : adjacent_5p upward |
|
B105-B106 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A3-B107 : outward |
|
A6-B104 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A2-B107 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B106 : A-T Ww/Ww pairing antiparallel cis |
|
A4-B105 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-B104 : U-A Ww/Ww pairing antiparallel cis XX |
|
A6-B103 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B102 : G-C Ww/Ww pairing antiparallel cis XIX |
|
|
