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1a51_MC
ADDED
@@ -0,0 +1,897 @@
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1 |
+
Residue conformations -------------------------------------------
|
2 |
+
A68 : G C3p_endo anti
|
3 |
+
A69 : G C3p_endo anti
|
4 |
+
A70 : C C3p_endo anti
|
5 |
+
A71 : C C3p_endo anti
|
6 |
+
A72 : G C3p_endo anti
|
7 |
+
A73 : A C2p_exo anti
|
8 |
+
A74 : U C3p_endo anti
|
9 |
+
A75 : G C3p_endo anti
|
10 |
+
A76 : G C3p_endo anti
|
11 |
+
A77 : U C3p_endo anti
|
12 |
+
A78 : A C3p_endo anti
|
13 |
+
A79 : G C3p_endo anti
|
14 |
+
A80 : U C3p_endo anti
|
15 |
+
A81 : G C3p_endo anti
|
16 |
+
A82 : U C3p_endo anti
|
17 |
+
A83 : G C3p_endo anti
|
18 |
+
A84 : G C3p_endo anti
|
19 |
+
A85 : G C3p_endo anti
|
20 |
+
A86 : G C3p_endo anti
|
21 |
+
A87 : U C4p_exo anti
|
22 |
+
A88 : C C2p_endo anti
|
23 |
+
A89 : U C3p_endo anti
|
24 |
+
A90 : C C2p_exo anti
|
25 |
+
A91 : C C3p_endo anti
|
26 |
+
A92 : C C3p_endo anti
|
27 |
+
A93 : C C3p_endo anti
|
28 |
+
A94 : A C3p_endo anti
|
29 |
+
A95 : U C3p_endo anti
|
30 |
+
A96 : G C3p_endo anti
|
31 |
+
A97 : C C3p_endo anti
|
32 |
+
A98 : G C3p_endo anti
|
33 |
+
A99 : A C2p_exo anti
|
34 |
+
A100 : G C3p_endo anti
|
35 |
+
A101 : A C2p_exo anti
|
36 |
+
A102 : G C3p_endo anti
|
37 |
+
A103 : U C3p_endo anti
|
38 |
+
A104 : A C3p_endo anti
|
39 |
+
A105 : G C3p_endo anti
|
40 |
+
A106 : G C3p_endo anti
|
41 |
+
A107 : C C3p_endo anti
|
42 |
+
A108 : C C3p_endo anti
|
43 |
+
Adjacent stackings ----------------------------------------------
|
44 |
+
A68-A69 : adjacent_5p upward
|
45 |
+
A69-A70 : adjacent_5p upward
|
46 |
+
A71-A72 : adjacent_5p upward
|
47 |
+
A73-A74 : adjacent_5p upward
|
48 |
+
A74-A75 : adjacent_5p upward
|
49 |
+
A75-A76 : adjacent_5p upward
|
50 |
+
A76-A77 : adjacent_5p upward
|
51 |
+
A77-A78 : adjacent_5p upward
|
52 |
+
A78-A79 : adjacent_5p upward
|
53 |
+
A79-A80 : adjacent_5p upward
|
54 |
+
A81-A82 : adjacent_5p upward
|
55 |
+
A82-A83 : adjacent_5p upward
|
56 |
+
A83-A84 : adjacent_5p upward
|
57 |
+
A84-A85 : adjacent_5p upward
|
58 |
+
A85-A86 : adjacent_5p upward
|
59 |
+
A93-A94 : adjacent_5p upward
|
60 |
+
A94-A95 : adjacent_5p upward
|
61 |
+
A96-A97 : adjacent_5p upward
|
62 |
+
A97-A98 : adjacent_5p upward
|
63 |
+
A99-A100 : adjacent_5p upward
|
64 |
+
A100-A101 : adjacent_5p upward
|
65 |
+
A101-A102 : adjacent_5p upward
|
66 |
+
A102-A103 : adjacent_5p upward
|
67 |
+
A103-A104 : adjacent_5p upward
|
68 |
+
A104-A105 : adjacent_5p upward
|
69 |
+
A105-A106 : adjacent_5p upward
|
70 |
+
A106-A107 : adjacent_5p upward
|
71 |
+
Non-Adjacent stackings ------------------------------------------
|
72 |
+
A73-A104 : outward
|
73 |
+
A78-A99 : outward
|
74 |
+
A81-A96 : outward
|
75 |
+
A83-A94 : outward
|
76 |
+
Number of stackings = 31
|
77 |
+
Number of adjacent stackings = 27
|
78 |
+
Number of non adjacent stackings = 4
|
79 |
+
Base-pairs ------------------------------------------------------
|
80 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
81 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
82 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
83 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
84 |
+
A72-A102 : G-G Hh/O2P pairing
|
85 |
+
A72-A103 : G-U Ww/O2P Bs/O2P pairing
|
86 |
+
A72-A104 : G-A Ss/Hh pairing antiparallel trans XI
|
87 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
88 |
+
A74-A102 : U-G Hh/Ww pairing antiparallel trans one_hbond 91
|
89 |
+
A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64
|
90 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
91 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
92 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
93 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
94 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
95 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
96 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
97 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
98 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
99 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
100 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
101 |
+
A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing
|
102 |
+
Residue conformations -------------------------------------------
|
103 |
+
A68 : G C2p_exo anti
|
104 |
+
A69 : G C3p_endo anti
|
105 |
+
A70 : C C3p_endo anti
|
106 |
+
A71 : C C3p_endo anti
|
107 |
+
A72 : G C3p_endo anti
|
108 |
+
A73 : A C2p_exo anti
|
109 |
+
A74 : U C3p_endo anti
|
110 |
+
A75 : G C3p_endo anti
|
111 |
+
A76 : G C3p_endo anti
|
112 |
+
A77 : U C3p_endo anti
|
113 |
+
A78 : A C3p_endo anti
|
114 |
+
A79 : G C3p_endo anti
|
115 |
+
A80 : U C3p_endo anti
|
116 |
+
A81 : G C3p_endo anti
|
117 |
+
A82 : U C3p_endo anti
|
118 |
+
A83 : G C3p_endo anti
|
119 |
+
A84 : G C3p_endo anti
|
120 |
+
A85 : G C3p_endo anti
|
121 |
+
A86 : G C3p_endo anti
|
122 |
+
A87 : U C4p_exo anti
|
123 |
+
A88 : C C2p_endo anti
|
124 |
+
A89 : U C4p_exo anti
|
125 |
+
A90 : C C2p_exo anti
|
126 |
+
A91 : C C3p_endo anti
|
127 |
+
A92 : C C3p_endo anti
|
128 |
+
A93 : C C3p_endo anti
|
129 |
+
A94 : A C3p_endo anti
|
130 |
+
A95 : U C3p_endo anti
|
131 |
+
A96 : G C3p_endo anti
|
132 |
+
A97 : C C3p_endo anti
|
133 |
+
A98 : G C3p_endo anti
|
134 |
+
A99 : A C2p_exo anti
|
135 |
+
A100 : G C3p_endo anti
|
136 |
+
A101 : A C3p_endo anti
|
137 |
+
A102 : G C3p_endo anti
|
138 |
+
A103 : U C3p_endo anti
|
139 |
+
A104 : A C3p_endo anti
|
140 |
+
A105 : G C3p_endo anti
|
141 |
+
A106 : G C3p_endo anti
|
142 |
+
A107 : C C3p_endo anti
|
143 |
+
A108 : C C3p_endo anti
|
144 |
+
Adjacent stackings ----------------------------------------------
|
145 |
+
A68-A69 : adjacent_5p upward
|
146 |
+
A69-A70 : adjacent_5p upward
|
147 |
+
A70-A71 : adjacent_5p upward
|
148 |
+
A71-A72 : adjacent_5p upward
|
149 |
+
A73-A74 : adjacent_5p upward
|
150 |
+
A74-A75 : adjacent_5p upward
|
151 |
+
A75-A76 : adjacent_5p upward
|
152 |
+
A76-A77 : adjacent_5p upward
|
153 |
+
A77-A78 : adjacent_5p upward
|
154 |
+
A78-A79 : adjacent_5p upward
|
155 |
+
A79-A80 : adjacent_5p upward
|
156 |
+
A81-A82 : adjacent_5p upward
|
157 |
+
A82-A83 : adjacent_5p upward
|
158 |
+
A83-A84 : adjacent_5p upward
|
159 |
+
A84-A85 : adjacent_5p upward
|
160 |
+
A85-A86 : adjacent_5p upward
|
161 |
+
A91-A92 : adjacent_5p upward
|
162 |
+
A93-A94 : adjacent_5p upward
|
163 |
+
A94-A95 : adjacent_5p upward
|
164 |
+
A96-A97 : adjacent_5p upward
|
165 |
+
A97-A98 : adjacent_5p upward
|
166 |
+
A99-A100 : adjacent_5p upward
|
167 |
+
A100-A101 : adjacent_5p upward
|
168 |
+
A101-A102 : adjacent_5p upward
|
169 |
+
A102-A103 : adjacent_5p upward
|
170 |
+
A103-A104 : adjacent_5p upward
|
171 |
+
A104-A105 : adjacent_5p upward
|
172 |
+
A105-A106 : adjacent_5p upward
|
173 |
+
A106-A107 : adjacent_5p upward
|
174 |
+
A107-A108 : adjacent_5p upward
|
175 |
+
Non-Adjacent stackings ------------------------------------------
|
176 |
+
A73-A104 : outward
|
177 |
+
A78-A99 : outward
|
178 |
+
A81-A96 : outward
|
179 |
+
A83-A94 : outward
|
180 |
+
Number of stackings = 34
|
181 |
+
Number of adjacent stackings = 30
|
182 |
+
Number of non adjacent stackings = 4
|
183 |
+
Base-pairs ------------------------------------------------------
|
184 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
185 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
186 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
187 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
188 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
189 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
190 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
191 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
192 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
193 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
194 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
195 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
196 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
197 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
198 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
199 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
200 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
201 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
202 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|
203 |
+
Residue conformations -------------------------------------------
|
204 |
+
A68 : G C3p_endo anti
|
205 |
+
A69 : G C3p_endo anti
|
206 |
+
A70 : C C3p_endo anti
|
207 |
+
A71 : C C3p_endo anti
|
208 |
+
A72 : G C3p_endo anti
|
209 |
+
A73 : A C2p_exo anti
|
210 |
+
A74 : U C3p_endo anti
|
211 |
+
A75 : G C3p_endo anti
|
212 |
+
A76 : G C3p_endo anti
|
213 |
+
A77 : U C3p_endo anti
|
214 |
+
A78 : A C3p_endo anti
|
215 |
+
A79 : G C3p_endo anti
|
216 |
+
A80 : U C3p_endo anti
|
217 |
+
A81 : G C3p_endo anti
|
218 |
+
A82 : U C3p_endo anti
|
219 |
+
A83 : G C3p_endo anti
|
220 |
+
A84 : G C3p_endo anti
|
221 |
+
A85 : G C3p_endo anti
|
222 |
+
A86 : G C3p_endo anti
|
223 |
+
A87 : U C4p_exo anti
|
224 |
+
A88 : C C2p_endo anti
|
225 |
+
A89 : U C4p_exo anti
|
226 |
+
A90 : C C2p_exo anti
|
227 |
+
A91 : C C3p_endo anti
|
228 |
+
A92 : C C3p_endo anti
|
229 |
+
A93 : C C3p_endo anti
|
230 |
+
A94 : A C3p_endo anti
|
231 |
+
A95 : U C3p_endo anti
|
232 |
+
A96 : G C3p_endo anti
|
233 |
+
A97 : C C3p_endo anti
|
234 |
+
A98 : G C3p_endo anti
|
235 |
+
A99 : A C2p_exo anti
|
236 |
+
A100 : G C3p_endo anti
|
237 |
+
A101 : A C3p_endo anti
|
238 |
+
A102 : G C3p_endo anti
|
239 |
+
A103 : U C3p_endo anti
|
240 |
+
A104 : A C3p_endo anti
|
241 |
+
A105 : G C3p_endo anti
|
242 |
+
A106 : G C3p_endo anti
|
243 |
+
A107 : C C3p_endo anti
|
244 |
+
A108 : C C3p_endo anti
|
245 |
+
Adjacent stackings ----------------------------------------------
|
246 |
+
A68-A69 : adjacent_5p upward
|
247 |
+
A69-A70 : adjacent_5p upward
|
248 |
+
A71-A72 : adjacent_5p upward
|
249 |
+
A73-A74 : adjacent_5p upward
|
250 |
+
A74-A75 : adjacent_5p upward
|
251 |
+
A75-A76 : adjacent_5p upward
|
252 |
+
A76-A77 : adjacent_5p upward
|
253 |
+
A77-A78 : adjacent_5p upward
|
254 |
+
A78-A79 : adjacent_5p upward
|
255 |
+
A79-A80 : adjacent_5p upward
|
256 |
+
A81-A82 : adjacent_5p upward
|
257 |
+
A83-A84 : adjacent_5p upward
|
258 |
+
A84-A85 : adjacent_5p upward
|
259 |
+
A85-A86 : adjacent_5p upward
|
260 |
+
A91-A92 : adjacent_5p upward
|
261 |
+
A94-A95 : adjacent_5p upward
|
262 |
+
A96-A97 : adjacent_5p upward
|
263 |
+
A97-A98 : adjacent_5p upward
|
264 |
+
A99-A100 : adjacent_5p upward
|
265 |
+
A100-A101 : adjacent_5p upward
|
266 |
+
A101-A102 : adjacent_5p upward
|
267 |
+
A102-A103 : adjacent_5p upward
|
268 |
+
A103-A104 : adjacent_5p upward
|
269 |
+
A104-A105 : adjacent_5p upward
|
270 |
+
A105-A106 : adjacent_5p upward
|
271 |
+
A106-A107 : adjacent_5p upward
|
272 |
+
Non-Adjacent stackings ------------------------------------------
|
273 |
+
A73-A104 : outward
|
274 |
+
A78-A99 : outward
|
275 |
+
A81-A96 : outward
|
276 |
+
A83-A94 : outward
|
277 |
+
Number of stackings = 30
|
278 |
+
Number of adjacent stackings = 26
|
279 |
+
Number of non adjacent stackings = 4
|
280 |
+
Base-pairs ------------------------------------------------------
|
281 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
282 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
283 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
284 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
285 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
286 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
287 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
288 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
289 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
290 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
291 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
292 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
293 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
294 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
295 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
296 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
297 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
298 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
299 |
+
A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing
|
300 |
+
Residue conformations -------------------------------------------
|
301 |
+
A68 : G C2p_exo anti
|
302 |
+
A69 : G C3p_endo anti
|
303 |
+
A70 : C C3p_endo anti
|
304 |
+
A71 : C C3p_endo anti
|
305 |
+
A72 : G C3p_endo anti
|
306 |
+
A73 : A C2p_exo anti
|
307 |
+
A74 : U C3p_endo anti
|
308 |
+
A75 : G C3p_endo anti
|
309 |
+
A76 : G C3p_endo anti
|
310 |
+
A77 : U C3p_endo anti
|
311 |
+
A78 : A C3p_endo anti
|
312 |
+
A79 : G C3p_endo anti
|
313 |
+
A80 : U C3p_endo anti
|
314 |
+
A81 : G C3p_endo anti
|
315 |
+
A82 : U C3p_endo anti
|
316 |
+
A83 : G C3p_endo anti
|
317 |
+
A84 : G C3p_endo anti
|
318 |
+
A85 : G C3p_endo anti
|
319 |
+
A86 : G C3p_endo anti
|
320 |
+
A87 : U C4p_exo anti
|
321 |
+
A88 : C C2p_endo anti
|
322 |
+
A89 : U C4p_exo anti
|
323 |
+
A90 : C C2p_exo anti
|
324 |
+
A91 : C C3p_endo anti
|
325 |
+
A92 : C C3p_endo anti
|
326 |
+
A93 : C C3p_endo anti
|
327 |
+
A94 : A C3p_endo anti
|
328 |
+
A95 : U C3p_endo anti
|
329 |
+
A96 : G C3p_endo anti
|
330 |
+
A97 : C C3p_endo anti
|
331 |
+
A98 : G C3p_endo anti
|
332 |
+
A99 : A C3p_endo anti
|
333 |
+
A100 : G C3p_endo anti
|
334 |
+
A101 : A C3p_endo anti
|
335 |
+
A102 : G C3p_endo anti
|
336 |
+
A103 : U C3p_endo anti
|
337 |
+
A104 : A C3p_endo anti
|
338 |
+
A105 : G C3p_endo anti
|
339 |
+
A106 : G C3p_endo anti
|
340 |
+
A107 : C C3p_endo anti
|
341 |
+
A108 : C C3p_endo anti
|
342 |
+
Adjacent stackings ----------------------------------------------
|
343 |
+
A68-A69 : adjacent_5p upward
|
344 |
+
A69-A70 : adjacent_5p upward
|
345 |
+
A70-A71 : adjacent_5p upward
|
346 |
+
A71-A72 : adjacent_5p upward
|
347 |
+
A73-A74 : adjacent_5p upward
|
348 |
+
A74-A75 : adjacent_5p upward
|
349 |
+
A75-A76 : adjacent_5p upward
|
350 |
+
A76-A77 : adjacent_5p upward
|
351 |
+
A78-A79 : adjacent_5p upward
|
352 |
+
A79-A80 : adjacent_5p upward
|
353 |
+
A81-A82 : adjacent_5p upward
|
354 |
+
A83-A84 : adjacent_5p upward
|
355 |
+
A84-A85 : adjacent_5p upward
|
356 |
+
A85-A86 : adjacent_5p upward
|
357 |
+
A91-A92 : adjacent_5p upward
|
358 |
+
A93-A94 : adjacent_5p upward
|
359 |
+
A94-A95 : adjacent_5p upward
|
360 |
+
A96-A97 : adjacent_5p upward
|
361 |
+
A97-A98 : adjacent_5p upward
|
362 |
+
A99-A100 : adjacent_5p upward
|
363 |
+
A100-A101 : adjacent_5p upward
|
364 |
+
A101-A102 : adjacent_5p upward
|
365 |
+
A102-A103 : adjacent_5p upward
|
366 |
+
A103-A104 : adjacent_5p upward
|
367 |
+
A104-A105 : adjacent_5p upward
|
368 |
+
A105-A106 : adjacent_5p upward
|
369 |
+
A106-A107 : adjacent_5p upward
|
370 |
+
A107-A108 : adjacent_5p upward
|
371 |
+
Non-Adjacent stackings ------------------------------------------
|
372 |
+
A73-A104 : outward
|
373 |
+
A78-A99 : outward
|
374 |
+
A81-A96 : outward
|
375 |
+
A83-A94 : outward
|
376 |
+
Number of stackings = 32
|
377 |
+
Number of adjacent stackings = 28
|
378 |
+
Number of non adjacent stackings = 4
|
379 |
+
Base-pairs ------------------------------------------------------
|
380 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
381 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
382 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
383 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
384 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
385 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
386 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
387 |
+
A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64
|
388 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
389 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
390 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
391 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
392 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
393 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
394 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
395 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
396 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
397 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
398 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
399 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|
400 |
+
Residue conformations -------------------------------------------
|
401 |
+
A68 : G C2p_exo anti
|
402 |
+
A69 : G C3p_endo anti
|
403 |
+
A70 : C C3p_endo anti
|
404 |
+
A71 : C C3p_endo anti
|
405 |
+
A72 : G C3p_endo anti
|
406 |
+
A73 : A C2p_exo anti
|
407 |
+
A74 : U C3p_endo anti
|
408 |
+
A75 : G C3p_endo anti
|
409 |
+
A76 : G C3p_endo anti
|
410 |
+
A77 : U C3p_endo anti
|
411 |
+
A78 : A C3p_endo anti
|
412 |
+
A79 : G C3p_endo anti
|
413 |
+
A80 : U C3p_endo anti
|
414 |
+
A81 : G C3p_endo anti
|
415 |
+
A82 : U C3p_endo anti
|
416 |
+
A83 : G C3p_endo anti
|
417 |
+
A84 : G C3p_endo anti
|
418 |
+
A85 : G C3p_endo anti
|
419 |
+
A86 : G C3p_endo anti
|
420 |
+
A87 : U C4p_exo anti
|
421 |
+
A88 : C C2p_endo anti
|
422 |
+
A89 : U C4p_exo anti
|
423 |
+
A90 : C C2p_exo anti
|
424 |
+
A91 : C C3p_endo anti
|
425 |
+
A92 : C C3p_endo anti
|
426 |
+
A93 : C C3p_endo anti
|
427 |
+
A94 : A C3p_endo anti
|
428 |
+
A95 : U C3p_endo anti
|
429 |
+
A96 : G C3p_endo anti
|
430 |
+
A97 : C C3p_endo anti
|
431 |
+
A98 : G C2p_exo anti
|
432 |
+
A99 : A C3p_endo anti
|
433 |
+
A100 : G C3p_endo anti
|
434 |
+
A101 : A C3p_endo anti
|
435 |
+
A102 : G C3p_endo anti
|
436 |
+
A103 : U C3p_endo anti
|
437 |
+
A104 : A C3p_endo anti
|
438 |
+
A105 : G C3p_endo anti
|
439 |
+
A106 : G C3p_endo anti
|
440 |
+
A107 : C C3p_endo anti
|
441 |
+
A108 : C C3p_endo anti
|
442 |
+
Adjacent stackings ----------------------------------------------
|
443 |
+
A68-A69 : adjacent_5p upward
|
444 |
+
A69-A70 : adjacent_5p upward
|
445 |
+
A70-A71 : adjacent_5p upward
|
446 |
+
A71-A72 : adjacent_5p upward
|
447 |
+
A73-A74 : adjacent_5p upward
|
448 |
+
A74-A75 : adjacent_5p upward
|
449 |
+
A75-A76 : adjacent_5p upward
|
450 |
+
A76-A77 : adjacent_5p upward
|
451 |
+
A77-A78 : adjacent_5p upward
|
452 |
+
A78-A79 : adjacent_5p upward
|
453 |
+
A79-A80 : adjacent_5p upward
|
454 |
+
A81-A82 : adjacent_5p upward
|
455 |
+
A83-A84 : adjacent_5p upward
|
456 |
+
A84-A85 : adjacent_5p upward
|
457 |
+
A85-A86 : adjacent_5p upward
|
458 |
+
A93-A94 : adjacent_5p upward
|
459 |
+
A94-A95 : adjacent_5p upward
|
460 |
+
A96-A97 : adjacent_5p upward
|
461 |
+
A97-A98 : adjacent_5p upward
|
462 |
+
A99-A100 : adjacent_5p upward
|
463 |
+
A100-A101 : adjacent_5p upward
|
464 |
+
A101-A102 : adjacent_5p upward
|
465 |
+
A102-A103 : adjacent_5p upward
|
466 |
+
A103-A104 : adjacent_5p upward
|
467 |
+
A104-A105 : adjacent_5p upward
|
468 |
+
A105-A106 : adjacent_5p upward
|
469 |
+
A106-A107 : adjacent_5p upward
|
470 |
+
A107-A108 : adjacent_5p upward
|
471 |
+
Non-Adjacent stackings ------------------------------------------
|
472 |
+
A73-A104 : outward
|
473 |
+
A78-A99 : outward
|
474 |
+
A81-A96 : outward
|
475 |
+
A83-A94 : outward
|
476 |
+
Number of stackings = 32
|
477 |
+
Number of adjacent stackings = 28
|
478 |
+
Number of non adjacent stackings = 4
|
479 |
+
Base-pairs ------------------------------------------------------
|
480 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
481 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
482 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
483 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
484 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
485 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
486 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
487 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
488 |
+
A77-A98 : U-G O2P/Ww pairing
|
489 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
490 |
+
A78-A98 : A-G Hh/Ss pairing antiparallel trans XI
|
491 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
492 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
493 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
494 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
495 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
496 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
497 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
498 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
499 |
+
A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing
|
500 |
+
Residue conformations -------------------------------------------
|
501 |
+
A68 : G C3p_endo anti
|
502 |
+
A69 : G C3p_endo anti
|
503 |
+
A70 : C C3p_endo anti
|
504 |
+
A71 : C C3p_endo anti
|
505 |
+
A72 : G C3p_endo anti
|
506 |
+
A73 : A C3p_endo anti
|
507 |
+
A74 : U C3p_endo anti
|
508 |
+
A75 : G C3p_endo anti
|
509 |
+
A76 : G C3p_endo anti
|
510 |
+
A77 : U C3p_endo anti
|
511 |
+
A78 : A C3p_endo anti
|
512 |
+
A79 : G C3p_endo anti
|
513 |
+
A80 : U C3p_endo anti
|
514 |
+
A81 : G C3p_endo anti
|
515 |
+
A82 : U C3p_endo anti
|
516 |
+
A83 : G C3p_endo anti
|
517 |
+
A84 : G C3p_endo anti
|
518 |
+
A85 : G C3p_endo anti
|
519 |
+
A86 : G C3p_endo anti
|
520 |
+
A87 : U C4p_exo anti
|
521 |
+
A88 : C C2p_endo anti
|
522 |
+
A89 : U C4p_exo anti
|
523 |
+
A90 : C C2p_exo anti
|
524 |
+
A91 : C C3p_endo anti
|
525 |
+
A92 : C C3p_endo anti
|
526 |
+
A93 : C C3p_endo anti
|
527 |
+
A94 : A C3p_endo anti
|
528 |
+
A95 : U C3p_endo anti
|
529 |
+
A96 : G C3p_endo anti
|
530 |
+
A97 : C C3p_endo anti
|
531 |
+
A98 : G C2p_exo anti
|
532 |
+
A99 : A C3p_endo anti
|
533 |
+
A100 : G C3p_endo anti
|
534 |
+
A101 : A C3p_endo anti
|
535 |
+
A102 : G C3p_endo anti
|
536 |
+
A103 : U C3p_endo anti
|
537 |
+
A104 : A C3p_endo anti
|
538 |
+
A105 : G C3p_endo anti
|
539 |
+
A106 : G C3p_endo anti
|
540 |
+
A107 : C C3p_endo anti
|
541 |
+
A108 : C C3p_endo anti
|
542 |
+
Adjacent stackings ----------------------------------------------
|
543 |
+
A68-A69 : adjacent_5p upward
|
544 |
+
A69-A70 : adjacent_5p upward
|
545 |
+
A71-A72 : adjacent_5p upward
|
546 |
+
A73-A74 : adjacent_5p upward
|
547 |
+
A74-A75 : adjacent_5p upward
|
548 |
+
A75-A76 : adjacent_5p upward
|
549 |
+
A76-A77 : adjacent_5p upward
|
550 |
+
A77-A78 : adjacent_5p upward
|
551 |
+
A78-A79 : adjacent_5p upward
|
552 |
+
A79-A80 : adjacent_5p upward
|
553 |
+
A81-A82 : adjacent_5p upward
|
554 |
+
A83-A84 : adjacent_5p upward
|
555 |
+
A84-A85 : adjacent_5p upward
|
556 |
+
A85-A86 : adjacent_5p upward
|
557 |
+
A90-A91 : adjacent_5p upward
|
558 |
+
A91-A92 : adjacent_5p upward
|
559 |
+
A94-A95 : adjacent_5p upward
|
560 |
+
A96-A97 : adjacent_5p upward
|
561 |
+
A97-A98 : adjacent_5p upward
|
562 |
+
A99-A100 : adjacent_5p upward
|
563 |
+
A100-A101 : adjacent_5p upward
|
564 |
+
A101-A102 : adjacent_5p upward
|
565 |
+
A102-A103 : adjacent_5p upward
|
566 |
+
A103-A104 : adjacent_5p upward
|
567 |
+
A104-A105 : adjacent_5p upward
|
568 |
+
A105-A106 : adjacent_5p upward
|
569 |
+
A106-A107 : adjacent_5p upward
|
570 |
+
Non-Adjacent stackings ------------------------------------------
|
571 |
+
A73-A104 : outward
|
572 |
+
A78-A99 : outward
|
573 |
+
A81-A96 : outward
|
574 |
+
A83-A94 : outward
|
575 |
+
Number of stackings = 31
|
576 |
+
Number of adjacent stackings = 27
|
577 |
+
Number of non adjacent stackings = 4
|
578 |
+
Base-pairs ------------------------------------------------------
|
579 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
580 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
581 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
582 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
583 |
+
A72-A104 : G-A Ss/Hh pairing antiparallel trans XI
|
584 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
585 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
586 |
+
A75-A101 : G-A Wh/Wh pairing antiparallel cis one_hbond
|
587 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
588 |
+
A77-A98 : U-G O2P/Ww O2P/Bs pairing
|
589 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
590 |
+
A78-A98 : A-G Hh/Ss pairing antiparallel trans XI
|
591 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
592 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
593 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
594 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
595 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
596 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
597 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
598 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis one_hbond 128
|
599 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|
600 |
+
Residue conformations -------------------------------------------
|
601 |
+
A68 : G C2p_exo anti
|
602 |
+
A69 : G C3p_endo anti
|
603 |
+
A70 : C C3p_endo anti
|
604 |
+
A71 : C C3p_endo anti
|
605 |
+
A72 : G C3p_endo anti
|
606 |
+
A73 : A C2p_exo anti
|
607 |
+
A74 : U C3p_endo anti
|
608 |
+
A75 : G C3p_endo anti
|
609 |
+
A76 : G C3p_endo anti
|
610 |
+
A77 : U C3p_endo anti
|
611 |
+
A78 : A C3p_endo anti
|
612 |
+
A79 : G C3p_endo anti
|
613 |
+
A80 : U C3p_endo anti
|
614 |
+
A81 : G C3p_endo anti
|
615 |
+
A82 : U C3p_endo anti
|
616 |
+
A83 : G C3p_endo anti
|
617 |
+
A84 : G C3p_endo anti
|
618 |
+
A85 : G C3p_endo anti
|
619 |
+
A86 : G C3p_endo anti
|
620 |
+
A87 : U C4p_exo anti
|
621 |
+
A88 : C C2p_endo anti
|
622 |
+
A89 : U C4p_exo anti
|
623 |
+
A90 : C C2p_exo anti
|
624 |
+
A91 : C C3p_endo anti
|
625 |
+
A92 : C C3p_endo anti
|
626 |
+
A93 : C C3p_endo anti
|
627 |
+
A94 : A C3p_endo anti
|
628 |
+
A95 : U C3p_endo anti
|
629 |
+
A96 : G C3p_endo anti
|
630 |
+
A97 : C C3p_endo anti
|
631 |
+
A98 : G C3p_endo anti
|
632 |
+
A99 : A C2p_exo anti
|
633 |
+
A100 : G C3p_endo anti
|
634 |
+
A101 : A C3p_endo anti
|
635 |
+
A102 : G C3p_endo anti
|
636 |
+
A103 : U C3p_endo anti
|
637 |
+
A104 : A C3p_endo anti
|
638 |
+
A105 : G C3p_endo anti
|
639 |
+
A106 : G C3p_endo anti
|
640 |
+
A107 : C C3p_endo anti
|
641 |
+
A108 : C C3p_endo anti
|
642 |
+
Adjacent stackings ----------------------------------------------
|
643 |
+
A68-A69 : adjacent_5p upward
|
644 |
+
A69-A70 : adjacent_5p upward
|
645 |
+
A70-A71 : adjacent_5p upward
|
646 |
+
A71-A72 : adjacent_5p upward
|
647 |
+
A73-A74 : adjacent_5p upward
|
648 |
+
A74-A75 : adjacent_5p upward
|
649 |
+
A75-A76 : adjacent_5p upward
|
650 |
+
A76-A77 : adjacent_5p upward
|
651 |
+
A77-A78 : adjacent_5p upward
|
652 |
+
A78-A79 : adjacent_5p upward
|
653 |
+
A79-A80 : adjacent_5p upward
|
654 |
+
A81-A82 : adjacent_5p upward
|
655 |
+
A83-A84 : adjacent_5p upward
|
656 |
+
A84-A85 : adjacent_5p upward
|
657 |
+
A85-A86 : adjacent_5p upward
|
658 |
+
A91-A92 : adjacent_5p upward
|
659 |
+
A93-A94 : adjacent_5p upward
|
660 |
+
A94-A95 : adjacent_5p upward
|
661 |
+
A96-A97 : adjacent_5p upward
|
662 |
+
A97-A98 : adjacent_5p upward
|
663 |
+
A99-A100 : adjacent_5p upward
|
664 |
+
A100-A101 : adjacent_5p upward
|
665 |
+
A101-A102 : adjacent_5p upward
|
666 |
+
A102-A103 : adjacent_5p upward
|
667 |
+
A103-A104 : adjacent_5p upward
|
668 |
+
A104-A105 : adjacent_5p upward
|
669 |
+
A105-A106 : adjacent_5p upward
|
670 |
+
A106-A107 : adjacent_5p upward
|
671 |
+
A107-A108 : adjacent_5p upward
|
672 |
+
Non-Adjacent stackings ------------------------------------------
|
673 |
+
A73-A104 : outward
|
674 |
+
A78-A99 : outward
|
675 |
+
A81-A96 : outward
|
676 |
+
A83-A94 : outward
|
677 |
+
Number of stackings = 33
|
678 |
+
Number of adjacent stackings = 29
|
679 |
+
Number of non adjacent stackings = 4
|
680 |
+
Base-pairs ------------------------------------------------------
|
681 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
682 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
683 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
684 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
685 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
686 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
687 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
688 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
689 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
690 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
691 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
692 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
693 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
694 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
695 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
696 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
697 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
698 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
699 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|
700 |
+
Residue conformations -------------------------------------------
|
701 |
+
A68 : G C3p_endo anti
|
702 |
+
A69 : G C3p_endo anti
|
703 |
+
A70 : C C3p_endo anti
|
704 |
+
A71 : C C3p_endo anti
|
705 |
+
A72 : G C3p_endo anti
|
706 |
+
A73 : A C2p_exo anti
|
707 |
+
A74 : U C3p_endo anti
|
708 |
+
A75 : G C3p_endo anti
|
709 |
+
A76 : G C3p_endo anti
|
710 |
+
A77 : U C3p_endo anti
|
711 |
+
A78 : A C3p_endo anti
|
712 |
+
A79 : G C3p_endo anti
|
713 |
+
A80 : U C3p_endo anti
|
714 |
+
A81 : G C3p_endo anti
|
715 |
+
A82 : U C3p_endo anti
|
716 |
+
A83 : G C3p_endo anti
|
717 |
+
A84 : G C3p_endo anti
|
718 |
+
A85 : G C3p_endo anti
|
719 |
+
A86 : G C3p_endo anti
|
720 |
+
A87 : U C4p_exo anti
|
721 |
+
A88 : C C2p_endo anti
|
722 |
+
A89 : U C4p_exo anti
|
723 |
+
A90 : C C2p_exo anti
|
724 |
+
A91 : C C3p_endo anti
|
725 |
+
A92 : C C3p_endo anti
|
726 |
+
A93 : C C3p_endo anti
|
727 |
+
A94 : A C3p_endo anti
|
728 |
+
A95 : U C3p_endo anti
|
729 |
+
A96 : G C3p_endo anti
|
730 |
+
A97 : C C3p_endo anti
|
731 |
+
A98 : G C3p_endo anti
|
732 |
+
A99 : A C3p_endo anti
|
733 |
+
A100 : G C3p_endo anti
|
734 |
+
A101 : A C3p_endo anti
|
735 |
+
A102 : G C3p_endo anti
|
736 |
+
A103 : U C3p_endo anti
|
737 |
+
A104 : A C3p_endo anti
|
738 |
+
A105 : G C3p_endo anti
|
739 |
+
A106 : G C3p_endo anti
|
740 |
+
A107 : C C3p_endo anti
|
741 |
+
A108 : C C3p_endo anti
|
742 |
+
Adjacent stackings ----------------------------------------------
|
743 |
+
A68-A69 : adjacent_5p upward
|
744 |
+
A69-A70 : adjacent_5p upward
|
745 |
+
A70-A71 : adjacent_5p upward
|
746 |
+
A71-A72 : adjacent_5p upward
|
747 |
+
A73-A74 : adjacent_5p upward
|
748 |
+
A74-A75 : adjacent_5p upward
|
749 |
+
A75-A76 : adjacent_5p upward
|
750 |
+
A76-A77 : adjacent_5p upward
|
751 |
+
A78-A79 : adjacent_5p upward
|
752 |
+
A79-A80 : adjacent_5p upward
|
753 |
+
A81-A82 : adjacent_5p upward
|
754 |
+
A83-A84 : adjacent_5p upward
|
755 |
+
A84-A85 : adjacent_5p upward
|
756 |
+
A85-A86 : adjacent_5p upward
|
757 |
+
A90-A91 : adjacent_5p upward
|
758 |
+
A91-A92 : adjacent_5p upward
|
759 |
+
A93-A94 : adjacent_5p upward
|
760 |
+
A94-A95 : adjacent_5p upward
|
761 |
+
A96-A97 : adjacent_5p upward
|
762 |
+
A97-A98 : adjacent_5p upward
|
763 |
+
A99-A100 : adjacent_5p upward
|
764 |
+
A100-A101 : adjacent_5p upward
|
765 |
+
A101-A102 : adjacent_5p upward
|
766 |
+
A102-A103 : adjacent_5p upward
|
767 |
+
A103-A104 : adjacent_5p upward
|
768 |
+
A104-A105 : adjacent_5p upward
|
769 |
+
A105-A106 : adjacent_5p upward
|
770 |
+
A106-A107 : adjacent_5p upward
|
771 |
+
Non-Adjacent stackings ------------------------------------------
|
772 |
+
A73-A104 : outward
|
773 |
+
A78-A99 : outward
|
774 |
+
A81-A96 : outward
|
775 |
+
A83-A94 : outward
|
776 |
+
Number of stackings = 32
|
777 |
+
Number of adjacent stackings = 28
|
778 |
+
Number of non adjacent stackings = 4
|
779 |
+
Base-pairs ------------------------------------------------------
|
780 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
781 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
782 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
783 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
784 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
785 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
786 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
787 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
788 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
789 |
+
A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI
|
790 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
791 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
792 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
793 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
794 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
795 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
796 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
797 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
798 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|
799 |
+
Residue conformations -------------------------------------------
|
800 |
+
A68 : G C3p_endo anti
|
801 |
+
A69 : G C3p_endo anti
|
802 |
+
A70 : C C3p_endo anti
|
803 |
+
A71 : C C3p_endo anti
|
804 |
+
A72 : G C3p_endo anti
|
805 |
+
A73 : A C2p_exo anti
|
806 |
+
A74 : U C3p_endo anti
|
807 |
+
A75 : G C3p_endo anti
|
808 |
+
A76 : G C3p_endo anti
|
809 |
+
A77 : U C3p_endo anti
|
810 |
+
A78 : A C3p_endo anti
|
811 |
+
A79 : G C3p_endo anti
|
812 |
+
A80 : U C3p_endo anti
|
813 |
+
A81 : G C3p_endo anti
|
814 |
+
A82 : U C3p_endo anti
|
815 |
+
A83 : G C3p_endo anti
|
816 |
+
A84 : G C3p_endo anti
|
817 |
+
A85 : G C3p_endo anti
|
818 |
+
A86 : G C3p_endo anti
|
819 |
+
A87 : U C4p_exo anti
|
820 |
+
A88 : C C2p_endo anti
|
821 |
+
A89 : U C4p_exo anti
|
822 |
+
A90 : C C2p_exo anti
|
823 |
+
A91 : C C3p_endo anti
|
824 |
+
A92 : C C3p_endo anti
|
825 |
+
A93 : C C3p_endo anti
|
826 |
+
A94 : A C3p_endo anti
|
827 |
+
A95 : U C3p_endo anti
|
828 |
+
A96 : G C3p_endo anti
|
829 |
+
A97 : C C3p_endo anti
|
830 |
+
A98 : G C3p_endo anti
|
831 |
+
A99 : A C3p_endo anti
|
832 |
+
A100 : G C3p_endo anti
|
833 |
+
A101 : A C3p_endo anti
|
834 |
+
A102 : G C3p_endo anti
|
835 |
+
A103 : U C3p_endo anti
|
836 |
+
A104 : A C3p_endo anti
|
837 |
+
A105 : G C3p_endo anti
|
838 |
+
A106 : G C3p_endo anti
|
839 |
+
A107 : C C3p_endo anti
|
840 |
+
A108 : C C3p_endo anti
|
841 |
+
Adjacent stackings ----------------------------------------------
|
842 |
+
A68-A69 : adjacent_5p upward
|
843 |
+
A69-A70 : adjacent_5p upward
|
844 |
+
A70-A71 : adjacent_5p upward
|
845 |
+
A71-A72 : adjacent_5p upward
|
846 |
+
A73-A74 : adjacent_5p upward
|
847 |
+
A74-A75 : adjacent_5p upward
|
848 |
+
A75-A76 : adjacent_5p upward
|
849 |
+
A76-A77 : adjacent_5p upward
|
850 |
+
A77-A78 : adjacent_5p upward
|
851 |
+
A78-A79 : adjacent_5p upward
|
852 |
+
A79-A80 : adjacent_5p upward
|
853 |
+
A81-A82 : adjacent_5p upward
|
854 |
+
A83-A84 : adjacent_5p upward
|
855 |
+
A84-A85 : adjacent_5p upward
|
856 |
+
A85-A86 : adjacent_5p upward
|
857 |
+
A91-A92 : adjacent_5p upward
|
858 |
+
A94-A95 : adjacent_5p upward
|
859 |
+
A96-A97 : adjacent_5p upward
|
860 |
+
A97-A98 : adjacent_5p upward
|
861 |
+
A99-A100 : adjacent_5p upward
|
862 |
+
A100-A101 : adjacent_5p upward
|
863 |
+
A101-A102 : adjacent_5p upward
|
864 |
+
A102-A103 : adjacent_5p upward
|
865 |
+
A103-A104 : adjacent_5p upward
|
866 |
+
A104-A105 : adjacent_5p upward
|
867 |
+
A105-A106 : adjacent_5p upward
|
868 |
+
A106-A107 : adjacent_5p upward
|
869 |
+
Non-Adjacent stackings ------------------------------------------
|
870 |
+
A73-A104 : outward
|
871 |
+
A78-A99 : outward
|
872 |
+
A81-A96 : outward
|
873 |
+
A83-A94 : outward
|
874 |
+
Number of stackings = 31
|
875 |
+
Number of adjacent stackings = 27
|
876 |
+
Number of non adjacent stackings = 4
|
877 |
+
Base-pairs ------------------------------------------------------
|
878 |
+
A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX
|
879 |
+
A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX
|
880 |
+
A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX
|
881 |
+
A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX
|
882 |
+
A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI
|
883 |
+
A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV
|
884 |
+
A74-A102 : U-G Bh/Ww pairing antiparallel trans 91
|
885 |
+
A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64
|
886 |
+
A76-A100 : G-G Ww/Bh pairing antiparallel trans 115
|
887 |
+
A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV
|
888 |
+
A78-A98 : A-G Hh/Ss pairing antiparallel trans XI
|
889 |
+
A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX
|
890 |
+
A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII
|
891 |
+
A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII
|
892 |
+
A82-A94 : U-A Ww/Ww pairing antiparallel cis XX
|
893 |
+
A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX
|
894 |
+
A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX
|
895 |
+
A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX
|
896 |
+
A86-A90 : G-C Bs/Ww pairing antiparallel cis 128
|
897 |
+
A89-A90 : U-C O2P/Ww adjacent_5p pairing
|