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1atv_MC ADDED
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1
+ Residue conformations -------------------------------------------
2
+ A1 : G C4p_exo anti
3
+ A2 : G C3p_endo anti
4
+ A3 : G C3p_endo anti
5
+ A4 : A C3p_endo anti
6
+ A5 : C C3p_endo anti
7
+ A6 : C C3p_endo anti
8
+ A7 : A C3p_endo anti
9
+ A8 : G C4p_exo anti
10
+ A9 : A C3p_endo syn
11
+ A10 : A C4p_exo anti
12
+ A11 : G C3p_endo anti
13
+ A12 : G C3p_endo anti
14
+ A13 : U C3p_endo anti
15
+ A14 : C C3p_endo anti
16
+ A15 : C C3p_endo anti
17
+ A16 : C C3p_endo anti
18
+ A17 : G C3p_endo anti
19
+ Adjacent stackings ----------------------------------------------
20
+ A1-A2 : adjacent_5p upward
21
+ A2-A3 : adjacent_5p upward
22
+ A3-A4 : adjacent_5p upward
23
+ A4-A5 : adjacent_5p upward
24
+ A9-A10 : adjacent_5p upward
25
+ A10-A11 : adjacent_5p upward pairing
26
+ A11-A12 : adjacent_5p upward
27
+ A12-A13 : adjacent_5p upward
28
+ A13-A14 : adjacent_5p upward
29
+ A14-A15 : adjacent_5p upward
30
+ A15-A16 : adjacent_5p upward
31
+ A16-A17 : adjacent_5p inward
32
+ Non-Adjacent stackings ------------------------------------------
33
+ Number of stackings = 12
34
+ Number of adjacent stackings = 12
35
+ Number of non adjacent stackings = 0
36
+ Base-pairs ------------------------------------------------------
37
+ A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX
38
+ A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX
39
+ A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX
40
+ A4-A13 : A-U Ww/Ww pairing antiparallel cis XX
41
+ A5-A7 : C-A O2P/Bh pairing
42
+ A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX
43
+ A6-A7 : C-A O2P/Hh adjacent_5p pairing
44
+ A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX
45
+ A7-A10 : A-A Ss/Wh pairing antiparallel cis one_hbond 40
46
+ A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
47
+ A10-A11 : A-G O2'/C8 adjacent_5p upward pairing
48
+ Residue conformations -------------------------------------------
49
+ A1 : G C4p_exo anti
50
+ A2 : G C3p_endo anti
51
+ A3 : G C3p_endo anti
52
+ A4 : A C3p_endo anti
53
+ A5 : C C3p_endo anti
54
+ A6 : C C3p_endo anti
55
+ A7 : A C3p_endo anti
56
+ A8 : G C4p_exo anti
57
+ A9 : A C3p_endo syn
58
+ A10 : A C4p_exo anti
59
+ A11 : G C3p_endo anti
60
+ A12 : G C3p_endo anti
61
+ A13 : U C3p_endo anti
62
+ A14 : C C3p_endo anti
63
+ A15 : C C3p_endo anti
64
+ A16 : C C3p_endo anti
65
+ A17 : G C3p_endo anti
66
+ Adjacent stackings ----------------------------------------------
67
+ A1-A2 : adjacent_5p upward
68
+ A2-A3 : adjacent_5p upward
69
+ A3-A4 : adjacent_5p upward
70
+ A4-A5 : adjacent_5p upward
71
+ A6-A7 : adjacent_5p upward pairing
72
+ A10-A11 : adjacent_5p upward pairing
73
+ A11-A12 : adjacent_5p upward
74
+ A12-A13 : adjacent_5p upward
75
+ A13-A14 : adjacent_5p upward
76
+ A14-A15 : adjacent_5p upward
77
+ A15-A16 : adjacent_5p upward
78
+ A16-A17 : adjacent_5p upward
79
+ Non-Adjacent stackings ------------------------------------------
80
+ A1-A17 : outward
81
+ Number of stackings = 13
82
+ Number of adjacent stackings = 12
83
+ Number of non adjacent stackings = 1
84
+ Base-pairs ------------------------------------------------------
85
+ A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX
86
+ A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX
87
+ A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX
88
+ A4-A13 : A-U Ww/Ww pairing antiparallel cis XX
89
+ A5-A7 : C-A O2P/Bh pairing
90
+ A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX
91
+ A6-A7 : C-A O2P/Hh adjacent_5p upward pairing
92
+ A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX
93
+ A7-A10 : A-A Ss/Wh O2'/Ww pairing antiparallel trans one_hbond 40
94
+ A10-A11 : A-G O2'/C8 adjacent_5p upward pairing
95
+ Residue conformations -------------------------------------------
96
+ A1 : G C4p_exo anti
97
+ A2 : G C3p_endo anti
98
+ A3 : G C3p_endo anti
99
+ A4 : A C3p_endo anti
100
+ A5 : C C3p_endo anti
101
+ A6 : C C3p_endo anti
102
+ A7 : A C3p_endo anti
103
+ A8 : G C4p_exo anti
104
+ A9 : A C3p_exo anti
105
+ A10 : A C4p_exo anti
106
+ A11 : G C3p_endo anti
107
+ A12 : G C3p_endo anti
108
+ A13 : U C3p_endo anti
109
+ A14 : C C3p_endo anti
110
+ A15 : C C3p_endo anti
111
+ A16 : C C3p_endo anti
112
+ A17 : G C3p_endo anti
113
+ Adjacent stackings ----------------------------------------------
114
+ A1-A2 : adjacent_5p upward
115
+ A2-A3 : adjacent_5p upward
116
+ A3-A4 : adjacent_5p upward
117
+ A4-A5 : adjacent_5p upward
118
+ A5-A6 : adjacent_5p upward
119
+ A9-A10 : adjacent_5p upward
120
+ A10-A11 : adjacent_5p upward
121
+ A11-A12 : adjacent_5p upward
122
+ A12-A13 : adjacent_5p upward
123
+ A13-A14 : adjacent_5p upward
124
+ A14-A15 : adjacent_5p upward
125
+ A15-A16 : adjacent_5p upward
126
+ Non-Adjacent stackings ------------------------------------------
127
+ Number of stackings = 12
128
+ Number of adjacent stackings = 12
129
+ Number of non adjacent stackings = 0
130
+ Base-pairs ------------------------------------------------------
131
+ A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX
132
+ A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX
133
+ A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX
134
+ A4-A13 : A-U Ww/Ww pairing antiparallel cis XX
135
+ A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX
136
+ A6-A8 : C-G O2P/Bs pairing
137
+ A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX
138
+ A7-A8 : A-G Hh/Sw Ss/O2' adjacent_5p pairing antiparallel cis one_hbond
139
+ A7-A9 : A-A O2'/Bh pairing
140
+ Residue conformations -------------------------------------------
141
+ A1 : G C4p_exo anti
142
+ A2 : G C3p_endo anti
143
+ A3 : G C3p_endo anti
144
+ A4 : A C3p_endo anti
145
+ A5 : C C3p_endo anti
146
+ A6 : C C3p_endo anti
147
+ A7 : A C3p_endo anti
148
+ A8 : G C4p_exo anti
149
+ A9 : A C3p_endo syn
150
+ A10 : A C4p_exo anti
151
+ A11 : G C3p_endo anti
152
+ A12 : G C3p_endo anti
153
+ A13 : U C3p_endo anti
154
+ A14 : C C3p_endo anti
155
+ A15 : C C3p_endo anti
156
+ A16 : C C3p_endo anti
157
+ A17 : G C3p_endo anti
158
+ Adjacent stackings ----------------------------------------------
159
+ A1-A2 : adjacent_5p upward
160
+ A2-A3 : adjacent_5p upward
161
+ A3-A4 : adjacent_5p upward
162
+ A4-A5 : adjacent_5p upward
163
+ A9-A10 : adjacent_5p upward
164
+ A10-A11 : adjacent_5p upward pairing
165
+ A11-A12 : adjacent_5p upward
166
+ A12-A13 : adjacent_5p upward
167
+ A13-A14 : adjacent_5p upward
168
+ A14-A15 : adjacent_5p upward
169
+ A15-A16 : adjacent_5p upward
170
+ A16-A17 : adjacent_5p inward
171
+ Non-Adjacent stackings ------------------------------------------
172
+ Number of stackings = 12
173
+ Number of adjacent stackings = 12
174
+ Number of non adjacent stackings = 0
175
+ Base-pairs ------------------------------------------------------
176
+ A1-A16 : G-C Ww/Ww pairing antiparallel cis XIX
177
+ A2-A15 : G-C Ww/Ww pairing antiparallel cis XIX
178
+ A3-A14 : G-C Ww/Ww pairing antiparallel cis XIX
179
+ A4-A13 : A-U Ww/Ww pairing antiparallel cis XX
180
+ A5-A7 : C-A O2P/Bh pairing
181
+ A5-A12 : C-G Ww/Ww pairing antiparallel cis XIX
182
+ A6-A7 : C-A O2P/Hh adjacent_5p pairing
183
+ A6-A11 : C-G Ww/Ww pairing antiparallel cis XIX
184
+ A7-A10 : A-A Ss/Wh pairing antiparallel cis one_hbond 40
185
+ A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
186
+ A10-A11 : A-G O2'/C8 adjacent_5p upward pairing