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1br3_MC
ADDED
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@@ -0,0 +1,85 @@
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| 1 |
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Residue conformations -------------------------------------------
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| 2 |
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A1 : G C3p_endo anti
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| 3 |
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A2 : G C3p_endo anti
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| 4 |
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A3 : A C3p_endo anti
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| 5 |
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A4 : C C3p_endo anti
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| 6 |
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A5 : A C2p_exo anti
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| 7 |
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A6 : G C3p_endo anti
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| 8 |
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A7 : A C3p_endo anti
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| 9 |
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A8 : U C3p_endo anti
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| 10 |
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A9 : G C3p_endo anti
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| 11 |
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A10 : G C3p_endo anti
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| 12 |
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A11 : G C3p_endo anti
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| 13 |
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A12 : A C3p_endo anti
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| 14 |
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A13 : G C3p_endo anti
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| 15 |
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B14 : G C3p_endo anti
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| 16 |
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B15 : C C3p_endo anti
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| 17 |
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B16 : T C3p_endo anti
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| 18 |
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B17 : C C3p_endo anti
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| 19 |
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B18 : C C3p_endo anti
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| 20 |
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B19 : C C4p_exo anti
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| 21 |
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B20 : A O4p_endo anti
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| 22 |
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B21 : G C2p_endo anti
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| 23 |
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B22 : G C3p_endo anti
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| 24 |
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B23 : C C4p_exo anti
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| 25 |
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B24 : T C2p_endo anti
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| 26 |
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B25 : A C3p_exo anti
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| 27 |
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B26 : G C2p_endo anti
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| 28 |
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B27 : C C4p_exo anti
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| 29 |
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B28 : T C2p_endo anti
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| 30 |
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B29 : A C3p_exo syn
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| 31 |
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B30 : C C1p_exo anti
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| 32 |
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B31 : A C1p_exo anti
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| 33 |
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B32 : A C1p_exo syn
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| 34 |
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B33 : C C2p_endo anti
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| 35 |
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B34 : G C2p_endo anti
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| 36 |
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B35 : A C2p_endo anti
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| 37 |
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B36 : C C2p_exo anti
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| 38 |
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B37 : T C3p_endo anti
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| 39 |
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B38 : G C3p_endo anti
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| 40 |
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B39 : T C3p_endo anti
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| 41 |
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B40 : C C3p_endo anti
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| 42 |
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B41 : C C3p_endo anti
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| 43 |
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Adjacent stackings ----------------------------------------------
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| 44 |
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A1-A2 : adjacent_5p upward
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| 45 |
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A2-A3 : adjacent_5p upward
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| 46 |
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A3-A4 : adjacent_5p upward
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| 47 |
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A5-A6 : adjacent_5p upward
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| 48 |
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A6-A7 : adjacent_5p upward
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| 49 |
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A7-A8 : adjacent_5p upward
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| 50 |
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A8-A9 : adjacent_5p upward
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| 51 |
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A9-A10 : adjacent_5p upward
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| 52 |
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A10-A11 : adjacent_5p upward
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| 53 |
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A11-A12 : adjacent_5p upward
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| 54 |
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A12-A13 : adjacent_5p upward
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| 55 |
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B14-B15 : adjacent_5p upward
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| 56 |
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B16-B17 : adjacent_5p upward
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| 57 |
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B18-B19 : adjacent_5p upward
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| 58 |
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B19-B20 : adjacent_5p upward
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| 59 |
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B20-B21 : adjacent_5p upward
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| 60 |
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B22-B23 : adjacent_5p upward
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| 61 |
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B24-B25 : adjacent_5p upward
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| 62 |
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B25-B26 : adjacent_5p upward
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| 63 |
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B26-B27 : adjacent_5p upward
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| 64 |
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B27-B28 : adjacent_5p upward
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| 65 |
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B31-B32 : adjacent_5p inward
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| 66 |
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B33-B34 : adjacent_5p upward
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| 67 |
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B34-B35 : adjacent_5p upward
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| 68 |
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B38-B39 : adjacent_5p upward
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| 69 |
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B39-B40 : adjacent_5p upward
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| 70 |
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Non-Adjacent stackings ------------------------------------------
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| 71 |
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A5-B38 : outward
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| 72 |
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B29-B31 : upward
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| 73 |
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Number of stackings = 28
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| 74 |
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Number of adjacent stackings = 26
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| 75 |
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Number of non adjacent stackings = 2
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| 76 |
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Base-pairs ------------------------------------------------------
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| 77 |
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A1-B41 : G-C Ww/Ww pairing antiparallel cis XIX
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| 78 |
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A2-B40 : G-C Ww/Ww pairing antiparallel cis XIX
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| 79 |
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A3-B39 : A-T Ww/Ww pairing antiparallel cis
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| 80 |
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A4-B38 : C-G Ww/Ww pairing antiparallel cis XIX
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| 81 |
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A5-B37 : A-T Ww/Ws pairing antiparallel cis
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| 82 |
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A6-B36 : G-C Ww/Ww pairing antiparallel cis XIX
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| 83 |
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B28-B29 : T-A O2P/Bh adjacent_5p pairing
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| 84 |
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B28-B35 : T-A Ww/Ww pairing antiparallel cis
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| 85 |
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B29-B33 : A-C Ss/Hw pairing antiparallel trans one_hbond 72
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