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1anr_MC
ADDED
@@ -0,0 +1,1200 @@
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1 |
+
Residue conformations -------------------------------------------
|
2 |
+
A17 : G C2p_exo anti
|
3 |
+
A18 : G C3p_endo anti
|
4 |
+
A19 : C C3p_endo anti
|
5 |
+
A20 : A C3p_endo anti
|
6 |
+
A21 : G C3p_endo anti
|
7 |
+
A22 : A C3p_endo anti
|
8 |
+
A23 : U C3p_endo anti
|
9 |
+
A24 : C C2p_endo anti
|
10 |
+
A25 : U C3p_endo anti
|
11 |
+
A26 : G C3p_endo anti
|
12 |
+
A27 : A O4p_endo anti
|
13 |
+
A28 : G O4p_endo anti
|
14 |
+
A29 : C C2p_exo anti
|
15 |
+
A30 : C C4p_endo syn
|
16 |
+
A31 : U C3p_endo anti
|
17 |
+
A32 : G C3p_endo anti
|
18 |
+
A33 : G C3p_exo anti
|
19 |
+
A34 : G C2p_exo anti
|
20 |
+
A35 : A C3p_exo anti
|
21 |
+
A36 : G C3p_endo anti
|
22 |
+
A37 : C C2p_exo anti
|
23 |
+
A38 : U C2p_exo anti
|
24 |
+
A39 : C C3p_endo anti
|
25 |
+
A40 : U C2p_exo anti
|
26 |
+
A41 : C C3p_endo anti
|
27 |
+
A42 : U C3p_endo anti
|
28 |
+
A43 : G C3p_endo anti
|
29 |
+
A44 : C C2p_exo anti
|
30 |
+
A45 : C C3p_endo anti
|
31 |
+
Adjacent stackings ----------------------------------------------
|
32 |
+
A17-A18 : adjacent_5p upward
|
33 |
+
A18-A19 : adjacent_5p upward
|
34 |
+
A19-A20 : adjacent_5p upward
|
35 |
+
A20-A21 : adjacent_5p upward
|
36 |
+
A21-A22 : adjacent_5p upward
|
37 |
+
A22-A23 : adjacent_5p upward
|
38 |
+
A26-A27 : adjacent_5p upward
|
39 |
+
A27-A28 : adjacent_5p upward
|
40 |
+
A28-A29 : adjacent_5p upward
|
41 |
+
A36-A37 : adjacent_5p upward
|
42 |
+
A38-A39 : adjacent_5p upward
|
43 |
+
A41-A42 : adjacent_5p upward
|
44 |
+
A43-A44 : adjacent_5p upward
|
45 |
+
A44-A45 : adjacent_5p upward
|
46 |
+
Non-Adjacent stackings ------------------------------------------
|
47 |
+
A20-A43 : outward
|
48 |
+
A28-A38 : outward
|
49 |
+
Number of stackings = 16
|
50 |
+
Number of adjacent stackings = 14
|
51 |
+
Number of non adjacent stackings = 2
|
52 |
+
Base-pairs ------------------------------------------------------
|
53 |
+
A17-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond
|
54 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
55 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
56 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
57 |
+
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond
|
58 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
59 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
60 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis
|
61 |
+
A29-A36 : C-G Ww/Wh pairing antiparallel cis one_hbond
|
62 |
+
A31-A33 : U-G O2P/Hh pairing
|
63 |
+
A32-A34 : G-G O2'/Bs pairing
|
64 |
+
Residue conformations -------------------------------------------
|
65 |
+
A17 : G C2p_exo anti
|
66 |
+
A18 : G C4p_exo anti
|
67 |
+
A19 : C C2p_exo anti
|
68 |
+
A20 : A C3p_endo anti
|
69 |
+
A21 : G C2p_exo anti
|
70 |
+
A22 : A C3p_endo anti
|
71 |
+
A23 : U C2p_exo anti
|
72 |
+
A24 : C C3p_endo anti
|
73 |
+
A25 : U C2p_exo anti
|
74 |
+
A26 : G C3p_endo anti
|
75 |
+
A27 : A C3p_endo anti
|
76 |
+
A28 : G C3p_endo anti
|
77 |
+
A29 : C C3p_endo anti
|
78 |
+
A30 : C C2p_exo anti
|
79 |
+
A31 : U C3p_endo anti
|
80 |
+
A32 : G C3p_endo anti
|
81 |
+
A33 : G C2p_exo anti
|
82 |
+
A34 : G C3p_endo syn
|
83 |
+
A35 : A C3p_exo anti
|
84 |
+
A36 : G C3p_endo anti
|
85 |
+
A37 : C C2p_exo anti
|
86 |
+
A38 : U C2p_exo anti
|
87 |
+
A39 : C C3p_endo anti
|
88 |
+
A40 : U C3p_endo anti
|
89 |
+
A41 : C C3p_endo anti
|
90 |
+
A42 : U C3p_endo anti
|
91 |
+
A43 : G C3p_endo anti
|
92 |
+
A44 : C C3p_endo anti
|
93 |
+
A45 : C C3p_endo anti
|
94 |
+
Adjacent stackings ----------------------------------------------
|
95 |
+
A17-A18 : adjacent_5p upward
|
96 |
+
A18-A19 : adjacent_5p upward
|
97 |
+
A19-A20 : adjacent_5p upward
|
98 |
+
A20-A21 : adjacent_5p upward
|
99 |
+
A21-A22 : adjacent_5p upward
|
100 |
+
A22-A23 : adjacent_5p upward
|
101 |
+
A23-A24 : adjacent_5p upward
|
102 |
+
A26-A27 : adjacent_5p upward
|
103 |
+
A27-A28 : adjacent_5p upward
|
104 |
+
A28-A29 : adjacent_5p upward
|
105 |
+
A36-A37 : adjacent_5p upward
|
106 |
+
A43-A44 : adjacent_5p upward
|
107 |
+
Non-Adjacent stackings ------------------------------------------
|
108 |
+
A18-A45 : outward
|
109 |
+
A20-A43 : outward
|
110 |
+
A22-A41 : outward
|
111 |
+
A27-A39 : outward
|
112 |
+
Number of stackings = 16
|
113 |
+
Number of adjacent stackings = 12
|
114 |
+
Number of non adjacent stackings = 4
|
115 |
+
Base-pairs ------------------------------------------------------
|
116 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
117 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
118 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
119 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
120 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
121 |
+
A22-A24 : A-C O2P/Bh pairing
|
122 |
+
A22-A40 : A-U Ww/Ws pairing antiparallel cis
|
123 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
124 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
125 |
+
A28-A37 : G-C Ww/Ws pairing antiparallel cis one_hbond 130
|
126 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
127 |
+
A30-A34 : C-G Ws/Sw pairing antiparallel cis one_hbond 128
|
128 |
+
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing
|
129 |
+
A34-A35 : G-A O2'/Hh adjacent_5p pairing
|
130 |
+
Residue conformations -------------------------------------------
|
131 |
+
A17 : G C3p_endo anti
|
132 |
+
A18 : G C3p_endo anti
|
133 |
+
A19 : C C2p_exo anti
|
134 |
+
A20 : A C2p_exo anti
|
135 |
+
A21 : G C3p_endo anti
|
136 |
+
A22 : A C2p_exo anti
|
137 |
+
A23 : U C2p_exo anti
|
138 |
+
A24 : C C3p_exo anti
|
139 |
+
A25 : U O4p_endo syn
|
140 |
+
A26 : G C3p_endo anti
|
141 |
+
A27 : A C3p_endo anti
|
142 |
+
A28 : G C3p_endo anti
|
143 |
+
A29 : C C3p_endo anti
|
144 |
+
A30 : C C2p_exo anti
|
145 |
+
A31 : U C3p_endo anti
|
146 |
+
A32 : G O4p_endo anti
|
147 |
+
A33 : G C3p_exo anti
|
148 |
+
A34 : G C3p_endo syn
|
149 |
+
A35 : A O4p_endo anti
|
150 |
+
A36 : G C3p_endo anti
|
151 |
+
A37 : C C3p_endo anti
|
152 |
+
A38 : U C3p_endo anti
|
153 |
+
A39 : C C3p_endo anti
|
154 |
+
A40 : U C2p_exo anti
|
155 |
+
A41 : C C3p_endo anti
|
156 |
+
A42 : U C3p_endo anti
|
157 |
+
A43 : G C3p_endo anti
|
158 |
+
A44 : C C3p_endo anti
|
159 |
+
A45 : C C3p_endo anti
|
160 |
+
Adjacent stackings ----------------------------------------------
|
161 |
+
A18-A19 : adjacent_5p upward
|
162 |
+
A20-A21 : adjacent_5p upward
|
163 |
+
A21-A22 : adjacent_5p upward
|
164 |
+
A26-A27 : adjacent_5p upward
|
165 |
+
A27-A28 : adjacent_5p upward
|
166 |
+
A28-A29 : adjacent_5p upward
|
167 |
+
A36-A37 : adjacent_5p upward
|
168 |
+
A43-A44 : adjacent_5p upward
|
169 |
+
A44-A45 : adjacent_5p upward
|
170 |
+
Non-Adjacent stackings ------------------------------------------
|
171 |
+
A20-A43 : outward
|
172 |
+
A27-A39 : outward
|
173 |
+
Number of stackings = 11
|
174 |
+
Number of adjacent stackings = 9
|
175 |
+
Number of non adjacent stackings = 2
|
176 |
+
Base-pairs ------------------------------------------------------
|
177 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis one_hbond
|
178 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
179 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
180 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
181 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
182 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
183 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
184 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
|
185 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
186 |
+
A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond
|
187 |
+
A33-A34 : G-G O2P/Bs adjacent_5p pairing
|
188 |
+
A34-A35 : G-A O2'/C8 adjacent_5p pairing
|
189 |
+
Residue conformations -------------------------------------------
|
190 |
+
A17 : G C4p_exo anti
|
191 |
+
A18 : G C3p_endo anti
|
192 |
+
A19 : C C2p_exo anti
|
193 |
+
A20 : A C2p_exo anti
|
194 |
+
A21 : G C3p_endo anti
|
195 |
+
A22 : A C2p_exo anti
|
196 |
+
A23 : U C3p_endo anti
|
197 |
+
A24 : C C2p_endo anti
|
198 |
+
A25 : U C2p_exo anti
|
199 |
+
A26 : G C3p_endo anti
|
200 |
+
A27 : A C3p_endo anti
|
201 |
+
A28 : G C3p_endo anti
|
202 |
+
A29 : C C3p_endo anti
|
203 |
+
A30 : C C2p_exo anti
|
204 |
+
A31 : U C4p_exo anti
|
205 |
+
A32 : G C1p_endo anti
|
206 |
+
A33 : G C2p_endo anti
|
207 |
+
A34 : G C3p_endo anti
|
208 |
+
A35 : A O4p_endo anti
|
209 |
+
A36 : G C2p_exo anti
|
210 |
+
A37 : C C2p_exo anti
|
211 |
+
A38 : U O4p_endo anti
|
212 |
+
A39 : C C4p_exo anti
|
213 |
+
A40 : U C2p_exo anti
|
214 |
+
A41 : C C3p_endo anti
|
215 |
+
A42 : U C2p_exo anti
|
216 |
+
A43 : G C3p_endo anti
|
217 |
+
A44 : C C2p_exo anti
|
218 |
+
A45 : C C2p_exo anti
|
219 |
+
Adjacent stackings ----------------------------------------------
|
220 |
+
A17-A18 : adjacent_5p upward
|
221 |
+
A18-A19 : adjacent_5p upward
|
222 |
+
A19-A20 : adjacent_5p upward
|
223 |
+
A20-A21 : adjacent_5p upward
|
224 |
+
A21-A22 : adjacent_5p upward
|
225 |
+
A22-A23 : adjacent_5p upward
|
226 |
+
A23-A24 : adjacent_5p upward
|
227 |
+
A27-A28 : adjacent_5p upward
|
228 |
+
A29-A30 : adjacent_5p upward
|
229 |
+
A34-A35 : adjacent_5p upward
|
230 |
+
A36-A37 : adjacent_5p upward
|
231 |
+
A40-A41 : adjacent_5p upward
|
232 |
+
A41-A42 : adjacent_5p upward
|
233 |
+
A42-A43 : adjacent_5p upward
|
234 |
+
A43-A44 : adjacent_5p upward
|
235 |
+
Non-Adjacent stackings ------------------------------------------
|
236 |
+
A18-A45 : outward
|
237 |
+
A20-A43 : outward
|
238 |
+
A34-A36 : upward
|
239 |
+
Number of stackings = 18
|
240 |
+
Number of adjacent stackings = 15
|
241 |
+
Number of non adjacent stackings = 3
|
242 |
+
Base-pairs ------------------------------------------------------
|
243 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
244 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
245 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
246 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
247 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
248 |
+
A22-A24 : A-C O2P/Bh pairing
|
249 |
+
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
|
250 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis
|
251 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
252 |
+
Residue conformations -------------------------------------------
|
253 |
+
A17 : G C3p_endo anti
|
254 |
+
A18 : G C3p_endo anti
|
255 |
+
A19 : C C2p_exo anti
|
256 |
+
A20 : A C2p_exo anti
|
257 |
+
A21 : G C2p_exo anti
|
258 |
+
A22 : A C1p_exo anti
|
259 |
+
A23 : U C3p_exo syn
|
260 |
+
A24 : C C3p_exo anti
|
261 |
+
A25 : U C2p_endo anti
|
262 |
+
A26 : G C2p_exo anti
|
263 |
+
A27 : A C2p_exo anti
|
264 |
+
A28 : G C3p_endo anti
|
265 |
+
A29 : C C2p_exo anti
|
266 |
+
A30 : C C2p_exo anti
|
267 |
+
A31 : U C3p_endo anti
|
268 |
+
A32 : G C3p_endo anti
|
269 |
+
A33 : G C3p_endo anti
|
270 |
+
A34 : G C3p_endo syn
|
271 |
+
A35 : A C3p_exo anti
|
272 |
+
A36 : G C2p_exo anti
|
273 |
+
A37 : C C2p_exo anti
|
274 |
+
A38 : U C3p_endo anti
|
275 |
+
A39 : C C3p_endo anti
|
276 |
+
A40 : U C2p_exo anti
|
277 |
+
A41 : C C2p_exo anti
|
278 |
+
A42 : U C3p_endo anti
|
279 |
+
A43 : G C3p_endo anti
|
280 |
+
A44 : C C3p_endo anti
|
281 |
+
A45 : C C3p_endo anti
|
282 |
+
Adjacent stackings ----------------------------------------------
|
283 |
+
A18-A19 : adjacent_5p upward
|
284 |
+
A20-A21 : adjacent_5p upward
|
285 |
+
A21-A22 : adjacent_5p upward
|
286 |
+
A26-A27 : adjacent_5p upward
|
287 |
+
A27-A28 : adjacent_5p upward
|
288 |
+
A28-A29 : adjacent_5p upward
|
289 |
+
A36-A37 : adjacent_5p upward
|
290 |
+
A39-A40 : adjacent_5p upward
|
291 |
+
A43-A44 : adjacent_5p upward
|
292 |
+
A44-A45 : adjacent_5p upward
|
293 |
+
Non-Adjacent stackings ------------------------------------------
|
294 |
+
A18-A45 : outward
|
295 |
+
A20-A43 : outward
|
296 |
+
A21-A42 : outward
|
297 |
+
A22-A24 : upward
|
298 |
+
A22-A41 : outward
|
299 |
+
Number of stackings = 15
|
300 |
+
Number of adjacent stackings = 10
|
301 |
+
Number of non adjacent stackings = 5
|
302 |
+
Base-pairs ------------------------------------------------------
|
303 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
304 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
305 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
306 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
307 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
308 |
+
A23-A24 : U-C O2'/Hh adjacent_5p pairing
|
309 |
+
A23-A41 : U-C Ww/O2' pairing
|
310 |
+
A24-A40 : C-U Ws/Ww pairing antiparallel cis one_hbond 106
|
311 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
312 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
313 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130
|
314 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
315 |
+
A30-A34 : C-G Ws/Ww pairing antiparallel cis one_hbond 130
|
316 |
+
A33-A34 : G-G O2'/Ss adjacent_5p pairing
|
317 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|
318 |
+
Residue conformations -------------------------------------------
|
319 |
+
A17 : G C4p_exo anti
|
320 |
+
A18 : G C3p_endo anti
|
321 |
+
A19 : C C2p_exo anti
|
322 |
+
A20 : A C3p_endo anti
|
323 |
+
A21 : G C3p_endo anti
|
324 |
+
A22 : A C2p_exo anti
|
325 |
+
A23 : U C3p_exo anti
|
326 |
+
A24 : C C3p_endo anti
|
327 |
+
A25 : U C2p_endo anti
|
328 |
+
A26 : G C3p_endo anti
|
329 |
+
A27 : A C3p_endo anti
|
330 |
+
A28 : G C3p_endo anti
|
331 |
+
A29 : C O4p_endo anti
|
332 |
+
A30 : C O4p_endo anti
|
333 |
+
A31 : U O4p_endo anti
|
334 |
+
A32 : G C3p_endo anti
|
335 |
+
A33 : G C3p_exo anti
|
336 |
+
A34 : G C1p_endo syn
|
337 |
+
A35 : A C2p_exo anti
|
338 |
+
A36 : G C2p_exo anti
|
339 |
+
A37 : C C2p_exo anti
|
340 |
+
A38 : U C2p_exo anti
|
341 |
+
A39 : C C2p_exo anti
|
342 |
+
A40 : U C3p_endo anti
|
343 |
+
A41 : C C4p_exo anti
|
344 |
+
A42 : U C3p_endo anti
|
345 |
+
A43 : G C3p_endo anti
|
346 |
+
A44 : C C2p_exo anti
|
347 |
+
A45 : C C3p_endo anti
|
348 |
+
Adjacent stackings ----------------------------------------------
|
349 |
+
A17-A18 : adjacent_5p upward
|
350 |
+
A18-A19 : adjacent_5p upward
|
351 |
+
A20-A21 : adjacent_5p upward
|
352 |
+
A21-A22 : adjacent_5p upward
|
353 |
+
A22-A23 : adjacent_5p upward
|
354 |
+
A26-A27 : adjacent_5p upward
|
355 |
+
A27-A28 : adjacent_5p upward
|
356 |
+
A28-A29 : adjacent_5p upward
|
357 |
+
A29-A30 : adjacent_5p upward
|
358 |
+
A32-A33 : adjacent_5p upward
|
359 |
+
A41-A42 : adjacent_5p upward
|
360 |
+
A43-A44 : adjacent_5p upward
|
361 |
+
Non-Adjacent stackings ------------------------------------------
|
362 |
+
A20-A43 : outward
|
363 |
+
Number of stackings = 13
|
364 |
+
Number of adjacent stackings = 12
|
365 |
+
Number of non adjacent stackings = 1
|
366 |
+
Base-pairs ------------------------------------------------------
|
367 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
368 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
369 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
370 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
371 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis
|
372 |
+
A26-A41 : G-C Ww/O2P pairing
|
373 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
374 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
|
375 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
376 |
+
A31-A32 : U-G O2'/C8 adjacent_5p pairing
|
377 |
+
A32-A34 : G-G O2'/Bs O2'/Ss pairing
|
378 |
+
A34-A35 : G-A O2'/Hh adjacent_5p pairing
|
379 |
+
Residue conformations -------------------------------------------
|
380 |
+
A17 : G C2p_exo anti
|
381 |
+
A18 : G C2p_exo anti
|
382 |
+
A19 : C C3p_endo anti
|
383 |
+
A20 : A C3p_endo anti
|
384 |
+
A21 : G C2p_exo anti
|
385 |
+
A22 : A C2p_exo anti
|
386 |
+
A23 : U C2p_exo anti
|
387 |
+
A24 : C C2p_endo anti
|
388 |
+
A25 : U C3p_endo anti
|
389 |
+
A26 : G C4p_exo anti
|
390 |
+
A27 : A C4p_exo anti
|
391 |
+
A28 : G C4p_exo anti
|
392 |
+
A29 : C C4p_exo anti
|
393 |
+
A30 : C C3p_endo anti
|
394 |
+
A31 : U C3p_endo anti
|
395 |
+
A32 : G C2p_exo anti
|
396 |
+
A33 : G C3p_endo anti
|
397 |
+
A34 : G C3p_endo anti
|
398 |
+
A35 : A C3p_exo anti
|
399 |
+
A36 : G C2p_exo anti
|
400 |
+
A37 : C C3p_endo anti
|
401 |
+
A38 : U C3p_endo anti
|
402 |
+
A39 : C C3p_endo anti
|
403 |
+
A40 : U C3p_endo anti
|
404 |
+
A41 : C C3p_endo anti
|
405 |
+
A42 : U C2p_exo anti
|
406 |
+
A43 : G C3p_endo anti
|
407 |
+
A44 : C C3p_endo anti
|
408 |
+
A45 : C C3p_endo anti
|
409 |
+
Adjacent stackings ----------------------------------------------
|
410 |
+
A18-A19 : adjacent_5p upward
|
411 |
+
A19-A20 : adjacent_5p upward
|
412 |
+
A20-A21 : adjacent_5p upward
|
413 |
+
A22-A23 : adjacent_5p upward
|
414 |
+
A26-A27 : adjacent_5p upward
|
415 |
+
A27-A28 : adjacent_5p upward
|
416 |
+
A28-A29 : adjacent_5p upward
|
417 |
+
A36-A37 : adjacent_5p upward
|
418 |
+
A38-A39 : adjacent_5p upward
|
419 |
+
A43-A44 : adjacent_5p upward
|
420 |
+
Non-Adjacent stackings ------------------------------------------
|
421 |
+
A20-A43 : outward
|
422 |
+
A21-A42 : outward
|
423 |
+
A34-A36 : upward
|
424 |
+
Number of stackings = 13
|
425 |
+
Number of adjacent stackings = 10
|
426 |
+
Number of non adjacent stackings = 3
|
427 |
+
Base-pairs ------------------------------------------------------
|
428 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
429 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
430 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
431 |
+
A25-A27 : U-A Ws/Hw pairing parallel cis one_hbond 47
|
432 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis one_hbond 130
|
433 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
434 |
+
A30-A33 : C-G Ww/Sw pairing antiparallel cis one_hbond 125
|
435 |
+
A32-A33 : G-G O2'/C8 adjacent_5p pairing
|
436 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|
437 |
+
Residue conformations -------------------------------------------
|
438 |
+
A17 : G C3p_endo anti
|
439 |
+
A18 : G C3p_endo anti
|
440 |
+
A19 : C C2p_exo anti
|
441 |
+
A20 : A C3p_endo anti
|
442 |
+
A21 : G C2p_exo anti
|
443 |
+
A22 : A C2p_exo anti
|
444 |
+
A23 : U C3p_endo anti
|
445 |
+
A24 : C C3p_endo anti
|
446 |
+
A25 : U C4p_exo syn
|
447 |
+
A26 : G C3p_endo anti
|
448 |
+
A27 : A C3p_endo anti
|
449 |
+
A28 : G C4p_exo anti
|
450 |
+
A29 : C O4p_endo anti
|
451 |
+
A30 : C O4p_endo anti
|
452 |
+
A31 : U C3p_endo anti
|
453 |
+
A32 : G C3p_exo anti
|
454 |
+
A33 : G C3p_endo anti
|
455 |
+
A34 : G C2p_exo syn
|
456 |
+
A35 : A C3p_exo anti
|
457 |
+
A36 : G C2p_exo anti
|
458 |
+
A37 : C C3p_endo anti
|
459 |
+
A38 : U C3p_endo anti
|
460 |
+
A39 : C O4p_endo anti
|
461 |
+
A40 : U C2p_exo anti
|
462 |
+
A41 : C C3p_endo anti
|
463 |
+
A42 : U C4p_exo anti
|
464 |
+
A43 : G C3p_endo anti
|
465 |
+
A44 : C C3p_endo anti
|
466 |
+
A45 : C C3p_endo anti
|
467 |
+
Adjacent stackings ----------------------------------------------
|
468 |
+
A18-A19 : adjacent_5p upward
|
469 |
+
A19-A20 : adjacent_5p upward
|
470 |
+
A20-A21 : adjacent_5p upward
|
471 |
+
A21-A22 : adjacent_5p upward
|
472 |
+
A22-A23 : adjacent_5p upward
|
473 |
+
A23-A24 : adjacent_5p upward
|
474 |
+
A26-A27 : adjacent_5p upward
|
475 |
+
A27-A28 : adjacent_5p upward
|
476 |
+
A28-A29 : adjacent_5p upward
|
477 |
+
A36-A37 : adjacent_5p upward
|
478 |
+
A41-A42 : adjacent_5p upward
|
479 |
+
A43-A44 : adjacent_5p upward
|
480 |
+
A44-A45 : adjacent_5p upward
|
481 |
+
Non-Adjacent stackings ------------------------------------------
|
482 |
+
A20-A43 : outward
|
483 |
+
A22-A41 : outward
|
484 |
+
A28-A38 : outward
|
485 |
+
Number of stackings = 16
|
486 |
+
Number of adjacent stackings = 13
|
487 |
+
Number of non adjacent stackings = 3
|
488 |
+
Base-pairs ------------------------------------------------------
|
489 |
+
A18-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond
|
490 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
491 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
492 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
493 |
+
A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond
|
494 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
495 |
+
A31-A32 : U-G O2'/Ss adjacent_5p pairing
|
496 |
+
A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109
|
497 |
+
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing
|
498 |
+
Residue conformations -------------------------------------------
|
499 |
+
A17 : G C3p_endo anti
|
500 |
+
A18 : G C2p_exo anti
|
501 |
+
A19 : C C2p_exo anti
|
502 |
+
A20 : A C2p_exo anti
|
503 |
+
A21 : G C3p_endo anti
|
504 |
+
A22 : A C3p_endo anti
|
505 |
+
A23 : U C2p_exo anti
|
506 |
+
A24 : C C2p_endo anti
|
507 |
+
A25 : U C2p_endo syn
|
508 |
+
A26 : G C2p_exo anti
|
509 |
+
A27 : A C4p_exo anti
|
510 |
+
A28 : G C4p_exo anti
|
511 |
+
A29 : C C2p_exo anti
|
512 |
+
A30 : C C3p_endo anti
|
513 |
+
A31 : U C3p_endo anti
|
514 |
+
A32 : G C2p_exo anti
|
515 |
+
A33 : G C2p_exo anti
|
516 |
+
A34 : G C2p_exo syn
|
517 |
+
A35 : A C3p_exo anti
|
518 |
+
A36 : G C3p_endo anti
|
519 |
+
A37 : C C3p_endo anti
|
520 |
+
A38 : U C3p_endo anti
|
521 |
+
A39 : C C3p_endo anti
|
522 |
+
A40 : U C3p_endo anti
|
523 |
+
A41 : C C3p_endo anti
|
524 |
+
A42 : U C2p_exo anti
|
525 |
+
A43 : G C2p_exo anti
|
526 |
+
A44 : C C2p_exo anti
|
527 |
+
A45 : C C3p_endo anti
|
528 |
+
Adjacent stackings ----------------------------------------------
|
529 |
+
A17-A18 : adjacent_5p upward
|
530 |
+
A18-A19 : adjacent_5p upward
|
531 |
+
A20-A21 : adjacent_5p upward
|
532 |
+
A21-A22 : adjacent_5p upward
|
533 |
+
A22-A23 : adjacent_5p upward
|
534 |
+
A23-A24 : adjacent_5p upward
|
535 |
+
A27-A28 : adjacent_5p upward
|
536 |
+
A28-A29 : adjacent_5p upward
|
537 |
+
A29-A30 : adjacent_5p upward
|
538 |
+
A40-A41 : adjacent_5p upward
|
539 |
+
A43-A44 : adjacent_5p upward
|
540 |
+
Non-Adjacent stackings ------------------------------------------
|
541 |
+
A20-A43 : outward
|
542 |
+
A21-A42 : outward
|
543 |
+
Number of stackings = 13
|
544 |
+
Number of adjacent stackings = 11
|
545 |
+
Number of non adjacent stackings = 2
|
546 |
+
Base-pairs ------------------------------------------------------
|
547 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
548 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis
|
549 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
550 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
551 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis
|
552 |
+
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond
|
553 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
554 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
|
555 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
556 |
+
A33-A34 : G-G O2P/Bs adjacent_5p pairing
|
557 |
+
Residue conformations -------------------------------------------
|
558 |
+
A17 : G C2p_exo anti
|
559 |
+
A18 : G C3p_endo anti
|
560 |
+
A19 : C C2p_exo anti
|
561 |
+
A20 : A C3p_endo anti
|
562 |
+
A21 : G C2p_exo anti
|
563 |
+
A22 : A C2p_exo anti
|
564 |
+
A23 : U C3p_exo anti
|
565 |
+
A24 : C C3p_endo anti
|
566 |
+
A25 : U C2p_endo anti
|
567 |
+
A26 : G C3p_endo anti
|
568 |
+
A27 : A O4p_endo anti
|
569 |
+
A28 : G O4p_endo anti
|
570 |
+
A29 : C C2p_exo anti
|
571 |
+
A30 : C C3p_endo anti
|
572 |
+
A31 : U C3p_endo anti
|
573 |
+
A32 : G C3p_exo anti
|
574 |
+
A33 : G C2p_endo anti
|
575 |
+
A34 : G C2p_exo syn
|
576 |
+
A35 : A C3p_exo anti
|
577 |
+
A36 : G C2p_exo anti
|
578 |
+
A37 : C C3p_endo anti
|
579 |
+
A38 : U C2p_exo anti
|
580 |
+
A39 : C O4p_endo anti
|
581 |
+
A40 : U C3p_endo anti
|
582 |
+
A41 : C C3p_endo anti
|
583 |
+
A42 : U C2p_exo anti
|
584 |
+
A43 : G C3p_endo anti
|
585 |
+
A44 : C C3p_endo anti
|
586 |
+
A45 : C C3p_endo anti
|
587 |
+
Adjacent stackings ----------------------------------------------
|
588 |
+
A17-A18 : adjacent_5p upward
|
589 |
+
A18-A19 : adjacent_5p upward
|
590 |
+
A19-A20 : adjacent_5p upward
|
591 |
+
A20-A21 : adjacent_5p upward
|
592 |
+
A22-A23 : adjacent_5p upward
|
593 |
+
A26-A27 : adjacent_5p upward
|
594 |
+
A27-A28 : adjacent_5p upward
|
595 |
+
A28-A29 : adjacent_5p upward
|
596 |
+
A29-A30 : adjacent_5p upward
|
597 |
+
A30-A31 : adjacent_5p upward
|
598 |
+
A36-A37 : adjacent_5p upward
|
599 |
+
A38-A39 : adjacent_5p upward
|
600 |
+
A40-A41 : adjacent_5p upward
|
601 |
+
A43-A44 : adjacent_5p upward
|
602 |
+
Non-Adjacent stackings ------------------------------------------
|
603 |
+
A20-A43 : outward
|
604 |
+
A21-A42 : outward
|
605 |
+
A28-A38 : outward
|
606 |
+
Number of stackings = 17
|
607 |
+
Number of adjacent stackings = 14
|
608 |
+
Number of non adjacent stackings = 3
|
609 |
+
Base-pairs ------------------------------------------------------
|
610 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
611 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
612 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
613 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
614 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130
|
615 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
616 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis
|
617 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|
618 |
+
Residue conformations -------------------------------------------
|
619 |
+
A17 : G C3p_endo anti
|
620 |
+
A18 : G C2p_exo anti
|
621 |
+
A19 : C C2p_exo anti
|
622 |
+
A20 : A C3p_endo anti
|
623 |
+
A21 : G C2p_exo anti
|
624 |
+
A22 : A C1p_endo syn
|
625 |
+
A23 : U C2p_exo anti
|
626 |
+
A24 : C C2p_exo anti
|
627 |
+
A25 : U C2p_endo anti
|
628 |
+
A26 : G C3p_endo anti
|
629 |
+
A27 : A C4p_exo anti
|
630 |
+
A28 : G C3p_endo anti
|
631 |
+
A29 : C C4p_exo anti
|
632 |
+
A30 : C C3p_endo anti
|
633 |
+
A31 : U C3p_endo anti
|
634 |
+
A32 : G C3p_exo anti
|
635 |
+
A33 : G C2p_exo anti
|
636 |
+
A34 : G C2p_exo anti
|
637 |
+
A35 : A C2p_endo anti
|
638 |
+
A36 : G C3p_endo anti
|
639 |
+
A37 : C C3p_endo anti
|
640 |
+
A38 : U C2p_exo anti
|
641 |
+
A39 : C O4p_endo anti
|
642 |
+
A40 : U C2p_exo anti
|
643 |
+
A41 : C C3p_endo anti
|
644 |
+
A42 : U C3p_endo anti
|
645 |
+
A43 : G C3p_endo anti
|
646 |
+
A44 : C C4p_exo anti
|
647 |
+
A45 : C C3p_endo anti
|
648 |
+
Adjacent stackings ----------------------------------------------
|
649 |
+
A18-A19 : adjacent_5p upward
|
650 |
+
A19-A20 : adjacent_5p upward
|
651 |
+
A20-A21 : adjacent_5p upward
|
652 |
+
A23-A24 : adjacent_5p upward
|
653 |
+
A27-A28 : adjacent_5p upward
|
654 |
+
A28-A29 : adjacent_5p upward
|
655 |
+
A29-A30 : adjacent_5p upward
|
656 |
+
A36-A37 : adjacent_5p upward
|
657 |
+
A43-A44 : adjacent_5p upward
|
658 |
+
Non-Adjacent stackings ------------------------------------------
|
659 |
+
A18-A45 : outward
|
660 |
+
A20-A43 : outward
|
661 |
+
A21-A42 : outward
|
662 |
+
Number of stackings = 12
|
663 |
+
Number of adjacent stackings = 9
|
664 |
+
Number of non adjacent stackings = 3
|
665 |
+
Base-pairs ------------------------------------------------------
|
666 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis
|
667 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
668 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
669 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis
|
670 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis
|
671 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
672 |
+
A30-A34 : C-G O2'/Bs pairing
|
673 |
+
A33-A34 : G-G O2'/Hh O2'/C8 adjacent_5p pairing
|
674 |
+
Residue conformations -------------------------------------------
|
675 |
+
A17 : G C2p_exo anti
|
676 |
+
A18 : G C2p_exo anti
|
677 |
+
A19 : C C3p_endo anti
|
678 |
+
A20 : A C2p_exo anti
|
679 |
+
A21 : G C3p_endo anti
|
680 |
+
A22 : A C3p_endo anti
|
681 |
+
A23 : U C3p_endo anti
|
682 |
+
A24 : C C2p_endo anti
|
683 |
+
A25 : U C3p_endo anti
|
684 |
+
A26 : G C2p_exo anti
|
685 |
+
A27 : A C4p_exo anti
|
686 |
+
A28 : G C3p_endo anti
|
687 |
+
A29 : C C3p_endo anti
|
688 |
+
A30 : C C2p_exo anti
|
689 |
+
A31 : U C3p_endo anti
|
690 |
+
A32 : G C3p_endo anti
|
691 |
+
A33 : G C3p_endo anti
|
692 |
+
A34 : G C1p_endo anti
|
693 |
+
A35 : A C3p_exo anti
|
694 |
+
A36 : G C2p_exo anti
|
695 |
+
A37 : C C3p_endo anti
|
696 |
+
A38 : U C2p_exo anti
|
697 |
+
A39 : C O4p_endo anti
|
698 |
+
A40 : U C2p_exo anti
|
699 |
+
A41 : C C3p_endo anti
|
700 |
+
A42 : U C3p_endo anti
|
701 |
+
A43 : G C3p_endo anti
|
702 |
+
A44 : C C3p_endo anti
|
703 |
+
A45 : C C2p_exo anti
|
704 |
+
Adjacent stackings ----------------------------------------------
|
705 |
+
A18-A19 : adjacent_5p upward
|
706 |
+
A20-A21 : adjacent_5p upward
|
707 |
+
A21-A22 : adjacent_5p upward
|
708 |
+
A22-A23 : adjacent_5p upward
|
709 |
+
A26-A27 : adjacent_5p upward
|
710 |
+
A27-A28 : adjacent_5p upward
|
711 |
+
A28-A29 : adjacent_5p upward
|
712 |
+
A29-A30 : adjacent_5p upward
|
713 |
+
A36-A37 : adjacent_5p upward
|
714 |
+
A37-A38 : adjacent_5p upward
|
715 |
+
A41-A42 : adjacent_5p upward
|
716 |
+
A43-A44 : adjacent_5p upward
|
717 |
+
A44-A45 : adjacent_5p upward
|
718 |
+
Non-Adjacent stackings ------------------------------------------
|
719 |
+
A20-A43 : outward
|
720 |
+
A34-A36 : upward
|
721 |
+
Number of stackings = 15
|
722 |
+
Number of adjacent stackings = 13
|
723 |
+
Number of non adjacent stackings = 2
|
724 |
+
Base-pairs ------------------------------------------------------
|
725 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis
|
726 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
727 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond
|
728 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
729 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
730 |
+
A30-A34 : C-G O2'/Ww pairing
|
731 |
+
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing
|
732 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|
733 |
+
Residue conformations -------------------------------------------
|
734 |
+
A17 : G C2p_exo anti
|
735 |
+
A18 : G C3p_endo anti
|
736 |
+
A19 : C C3p_endo anti
|
737 |
+
A20 : A C2p_exo anti
|
738 |
+
A21 : G C2p_exo anti
|
739 |
+
A22 : A O4p_endo syn
|
740 |
+
A23 : U C4p_endo anti
|
741 |
+
A24 : C C3p_endo anti
|
742 |
+
A25 : U C3p_endo syn
|
743 |
+
A26 : G C3p_endo anti
|
744 |
+
A27 : A C2p_exo anti
|
745 |
+
A28 : G C4p_exo anti
|
746 |
+
A29 : C C2p_exo anti
|
747 |
+
A30 : C C3p_endo syn
|
748 |
+
A31 : U C3p_endo anti
|
749 |
+
A32 : G C3p_endo anti
|
750 |
+
A33 : G C3p_exo anti
|
751 |
+
A34 : G C3p_endo anti
|
752 |
+
A35 : A C2p_endo anti
|
753 |
+
A36 : G C2p_exo anti
|
754 |
+
A37 : C C3p_endo anti
|
755 |
+
A38 : U C4p_exo anti
|
756 |
+
A39 : C O4p_endo anti
|
757 |
+
A40 : U C2p_exo anti
|
758 |
+
A41 : C C4p_exo anti
|
759 |
+
A42 : U C4p_exo anti
|
760 |
+
A43 : G C3p_endo anti
|
761 |
+
A44 : C C2p_exo anti
|
762 |
+
A45 : C C3p_endo anti
|
763 |
+
Adjacent stackings ----------------------------------------------
|
764 |
+
A17-A18 : adjacent_5p upward
|
765 |
+
A18-A19 : adjacent_5p upward
|
766 |
+
A19-A20 : adjacent_5p upward
|
767 |
+
A20-A21 : adjacent_5p upward
|
768 |
+
A26-A27 : adjacent_5p upward
|
769 |
+
A27-A28 : adjacent_5p upward
|
770 |
+
A28-A29 : adjacent_5p upward
|
771 |
+
A37-A38 : adjacent_5p upward
|
772 |
+
A43-A44 : adjacent_5p upward
|
773 |
+
Non-Adjacent stackings ------------------------------------------
|
774 |
+
A20-A43 : outward
|
775 |
+
A21-A42 : outward
|
776 |
+
A27-A39 : outward
|
777 |
+
Number of stackings = 12
|
778 |
+
Number of adjacent stackings = 9
|
779 |
+
Number of non adjacent stackings = 3
|
780 |
+
Base-pairs ------------------------------------------------------
|
781 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
782 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
783 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
784 |
+
A22-A41 : A-C Bh/O2' pairing
|
785 |
+
A23-A40 : U-U Ww/Wh pairing antiparallel cis one_hbond
|
786 |
+
A23-A41 : U-C Hw/Wh pairing antiparallel cis one_hbond 102
|
787 |
+
A25-A26 : U-G O2'/Hh adjacent_5p pairing
|
788 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130
|
789 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
790 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond
|
791 |
+
A29-A30 : C-C Ss/Hh adjacent_5p pairing antiparallel trans one_hbond
|
792 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis
|
793 |
+
Residue conformations -------------------------------------------
|
794 |
+
A17 : G C3p_endo anti
|
795 |
+
A18 : G C2p_exo anti
|
796 |
+
A19 : C C3p_endo anti
|
797 |
+
A20 : A C3p_endo anti
|
798 |
+
A21 : G C3p_endo anti
|
799 |
+
A22 : A C2p_exo anti
|
800 |
+
A23 : U C2p_exo anti
|
801 |
+
A24 : C C3p_endo anti
|
802 |
+
A25 : U C3p_endo anti
|
803 |
+
A26 : G C3p_endo anti
|
804 |
+
A27 : A C4p_exo anti
|
805 |
+
A28 : G C3p_endo anti
|
806 |
+
A29 : C C4p_exo anti
|
807 |
+
A30 : C C1p_exo anti
|
808 |
+
A31 : U O4p_endo anti
|
809 |
+
A32 : G C2p_exo anti
|
810 |
+
A33 : G C2p_endo anti
|
811 |
+
A34 : G C2p_exo syn
|
812 |
+
A35 : A C3p_exo anti
|
813 |
+
A36 : G C2p_exo anti
|
814 |
+
A37 : C C3p_endo anti
|
815 |
+
A38 : U O4p_endo anti
|
816 |
+
A39 : C C4p_exo anti
|
817 |
+
A40 : U C3p_endo anti
|
818 |
+
A41 : C C3p_endo anti
|
819 |
+
A42 : U C3p_endo anti
|
820 |
+
A43 : G C3p_endo anti
|
821 |
+
A44 : C C2p_exo anti
|
822 |
+
A45 : C C3p_endo anti
|
823 |
+
Adjacent stackings ----------------------------------------------
|
824 |
+
A18-A19 : adjacent_5p upward
|
825 |
+
A19-A20 : adjacent_5p upward
|
826 |
+
A20-A21 : adjacent_5p upward
|
827 |
+
A21-A22 : adjacent_5p upward
|
828 |
+
A22-A23 : adjacent_5p upward
|
829 |
+
A23-A24 : adjacent_5p upward
|
830 |
+
A26-A27 : adjacent_5p upward
|
831 |
+
A27-A28 : adjacent_5p upward
|
832 |
+
A28-A29 : adjacent_5p upward
|
833 |
+
A29-A30 : adjacent_5p upward pairing
|
834 |
+
A32-A33 : adjacent_5p upward
|
835 |
+
A36-A37 : adjacent_5p upward
|
836 |
+
A43-A44 : adjacent_5p upward
|
837 |
+
A44-A45 : adjacent_5p upward
|
838 |
+
Non-Adjacent stackings ------------------------------------------
|
839 |
+
A20-A43 : outward
|
840 |
+
A21-A42 : outward
|
841 |
+
Number of stackings = 16
|
842 |
+
Number of adjacent stackings = 14
|
843 |
+
Number of non adjacent stackings = 2
|
844 |
+
Base-pairs ------------------------------------------------------
|
845 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis
|
846 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
847 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis
|
848 |
+
A22-A24 : A-C O2P/Bh pairing
|
849 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
850 |
+
A29-A30 : C-C O2P/Bh adjacent_5p upward pairing
|
851 |
+
A29-A36 : C-G Wh/Wh pairing antiparallel cis one_hbond
|
852 |
+
A34-A35 : G-A O2'/Hh adjacent_5p pairing
|
853 |
+
Residue conformations -------------------------------------------
|
854 |
+
A17 : G O4p_endo anti
|
855 |
+
A18 : G C2p_exo anti
|
856 |
+
A19 : C C4p_exo anti
|
857 |
+
A20 : A C4p_exo anti
|
858 |
+
A21 : G C3p_endo anti
|
859 |
+
A22 : A C2p_exo anti
|
860 |
+
A23 : U C3p_endo anti
|
861 |
+
A24 : C C3p_endo anti
|
862 |
+
A25 : U C3p_endo syn
|
863 |
+
A26 : G C2p_exo anti
|
864 |
+
A27 : A C4p_exo anti
|
865 |
+
A28 : G C4p_exo anti
|
866 |
+
A29 : C O4p_endo anti
|
867 |
+
A30 : C C3p_endo anti
|
868 |
+
A31 : U O4p_endo anti
|
869 |
+
A32 : G C3p_endo anti
|
870 |
+
A33 : G C2p_endo anti
|
871 |
+
A34 : G C1p_endo anti
|
872 |
+
A35 : A C3p_exo anti
|
873 |
+
A36 : G C2p_exo anti
|
874 |
+
A37 : C C3p_endo anti
|
875 |
+
A38 : U C2p_exo anti
|
876 |
+
A39 : C O4p_endo anti
|
877 |
+
A40 : U C3p_endo anti
|
878 |
+
A41 : C C3p_endo anti
|
879 |
+
A42 : U C2p_exo anti
|
880 |
+
A43 : G C2p_exo anti
|
881 |
+
A44 : C C2p_exo anti
|
882 |
+
A45 : C C3p_endo anti
|
883 |
+
Adjacent stackings ----------------------------------------------
|
884 |
+
A17-A18 : adjacent_5p upward
|
885 |
+
A18-A19 : adjacent_5p upward
|
886 |
+
A19-A20 : adjacent_5p upward
|
887 |
+
A20-A21 : adjacent_5p upward
|
888 |
+
A21-A22 : adjacent_5p upward
|
889 |
+
A22-A23 : adjacent_5p upward
|
890 |
+
A26-A27 : adjacent_5p upward
|
891 |
+
A27-A28 : adjacent_5p upward
|
892 |
+
A28-A29 : adjacent_5p upward
|
893 |
+
A36-A37 : adjacent_5p upward
|
894 |
+
A43-A44 : adjacent_5p upward
|
895 |
+
A44-A45 : adjacent_5p upward
|
896 |
+
Non-Adjacent stackings ------------------------------------------
|
897 |
+
A20-A43 : outward
|
898 |
+
A21-A42 : outward
|
899 |
+
Number of stackings = 14
|
900 |
+
Number of adjacent stackings = 12
|
901 |
+
Number of non adjacent stackings = 2
|
902 |
+
Base-pairs ------------------------------------------------------
|
903 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
904 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
905 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
906 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
907 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
908 |
+
A30-A34 : C-G O2'/Bs pairing
|
909 |
+
A33-A34 : G-G O2P/Bs adjacent_5p pairing
|
910 |
+
Residue conformations -------------------------------------------
|
911 |
+
A17 : G C2p_exo anti
|
912 |
+
A18 : G C2p_exo anti
|
913 |
+
A19 : C C3p_endo anti
|
914 |
+
A20 : A C2p_exo anti
|
915 |
+
A21 : G C2p_exo anti
|
916 |
+
A22 : A C3p_endo anti
|
917 |
+
A23 : U C3p_exo anti
|
918 |
+
A24 : C C3p_endo anti
|
919 |
+
A25 : U C2p_endo anti
|
920 |
+
A26 : G C3p_endo anti
|
921 |
+
A27 : A C3p_endo anti
|
922 |
+
A28 : G C3p_endo anti
|
923 |
+
A29 : C C3p_endo anti
|
924 |
+
A30 : C C3p_endo anti
|
925 |
+
A31 : U C3p_endo anti
|
926 |
+
A32 : G C2p_exo anti
|
927 |
+
A33 : G C2p_exo anti
|
928 |
+
A34 : G C2p_exo syn
|
929 |
+
A35 : A C3p_exo anti
|
930 |
+
A36 : G C3p_endo anti
|
931 |
+
A37 : C C3p_endo anti
|
932 |
+
A38 : U O4p_endo anti
|
933 |
+
A39 : C C3p_endo anti
|
934 |
+
A40 : U C2p_exo anti
|
935 |
+
A41 : C C3p_endo anti
|
936 |
+
A42 : U O4p_endo anti
|
937 |
+
A43 : G C2p_exo anti
|
938 |
+
A44 : C C3p_endo anti
|
939 |
+
A45 : C C3p_endo anti
|
940 |
+
Adjacent stackings ----------------------------------------------
|
941 |
+
A17-A18 : adjacent_5p upward
|
942 |
+
A18-A19 : adjacent_5p upward
|
943 |
+
A20-A21 : adjacent_5p upward
|
944 |
+
A21-A22 : adjacent_5p upward
|
945 |
+
A27-A28 : adjacent_5p upward
|
946 |
+
A28-A29 : adjacent_5p upward
|
947 |
+
A29-A30 : adjacent_5p upward
|
948 |
+
A36-A37 : adjacent_5p upward
|
949 |
+
A43-A44 : adjacent_5p upward
|
950 |
+
Non-Adjacent stackings ------------------------------------------
|
951 |
+
A20-A43 : outward
|
952 |
+
Number of stackings = 10
|
953 |
+
Number of adjacent stackings = 9
|
954 |
+
Number of non adjacent stackings = 1
|
955 |
+
Base-pairs ------------------------------------------------------
|
956 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
|
957 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond
|
958 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
959 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
960 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis
|
961 |
+
A22-A23 : A-U Ss/Hh adjacent_5p pairing antiparallel trans one_hbond
|
962 |
+
A22-A24 : A-C O2P/Bh pairing
|
963 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
964 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis
|
965 |
+
Residue conformations -------------------------------------------
|
966 |
+
A17 : G C4p_exo anti
|
967 |
+
A18 : G C3p_endo anti
|
968 |
+
A19 : C C3p_endo anti
|
969 |
+
A20 : A C3p_endo anti
|
970 |
+
A21 : G C2p_exo anti
|
971 |
+
A22 : A C4p_exo anti
|
972 |
+
A23 : U C2p_exo anti
|
973 |
+
A24 : C C3p_endo anti
|
974 |
+
A25 : U C2p_endo anti
|
975 |
+
A26 : G C2p_exo anti
|
976 |
+
A27 : A O4p_endo anti
|
977 |
+
A28 : G O4p_endo anti
|
978 |
+
A29 : C C2p_exo anti
|
979 |
+
A30 : C C2p_exo anti
|
980 |
+
A31 : U C4p_endo anti
|
981 |
+
A32 : G C2p_exo anti
|
982 |
+
A33 : G C3p_endo anti
|
983 |
+
A34 : G O4p_exo anti
|
984 |
+
A35 : A C1p_exo anti
|
985 |
+
A36 : G C2p_exo anti
|
986 |
+
A37 : C C3p_endo anti
|
987 |
+
A38 : U O4p_endo anti
|
988 |
+
A39 : C O4p_endo anti
|
989 |
+
A40 : U C3p_endo anti
|
990 |
+
A41 : C C3p_endo anti
|
991 |
+
A42 : U C3p_endo anti
|
992 |
+
A43 : G C3p_endo anti
|
993 |
+
A44 : C C4p_exo anti
|
994 |
+
A45 : C C3p_endo anti
|
995 |
+
Adjacent stackings ----------------------------------------------
|
996 |
+
A17-A18 : adjacent_5p upward
|
997 |
+
A18-A19 : adjacent_5p upward
|
998 |
+
A20-A21 : adjacent_5p upward
|
999 |
+
A21-A22 : adjacent_5p upward
|
1000 |
+
A22-A23 : adjacent_5p upward
|
1001 |
+
A26-A27 : adjacent_5p upward
|
1002 |
+
A27-A28 : adjacent_5p upward
|
1003 |
+
A28-A29 : adjacent_5p upward
|
1004 |
+
A29-A30 : adjacent_5p upward
|
1005 |
+
A36-A37 : adjacent_5p upward
|
1006 |
+
A43-A44 : adjacent_5p upward
|
1007 |
+
Non-Adjacent stackings ------------------------------------------
|
1008 |
+
A20-A43 : outward
|
1009 |
+
A22-A41 : outward
|
1010 |
+
Number of stackings = 13
|
1011 |
+
Number of adjacent stackings = 11
|
1012 |
+
Number of non adjacent stackings = 2
|
1013 |
+
Base-pairs ------------------------------------------------------
|
1014 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis
|
1015 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
1016 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
1017 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
1018 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
1019 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis
|
1020 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
1021 |
+
A28-A37 : G-C Ws/Ws pairing antiparallel cis one_hbond
|
1022 |
+
A28-A38 : G-U Bs/O2' pairing
|
1023 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
1024 |
+
A30-A33 : C-G O2'/Ss O2'/C8 pairing
|
1025 |
+
A31-A32 : U-G O2P/Hh adjacent_5p pairing
|
1026 |
+
A31-A33 : U-G O2P/Hh pairing
|
1027 |
+
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing
|
1028 |
+
Residue conformations -------------------------------------------
|
1029 |
+
A17 : G C3p_endo anti
|
1030 |
+
A18 : G C3p_endo anti
|
1031 |
+
A19 : C C2p_exo anti
|
1032 |
+
A20 : A C2p_exo anti
|
1033 |
+
A21 : G C2p_exo anti
|
1034 |
+
A22 : A C1p_endo syn
|
1035 |
+
A23 : U C2p_exo anti
|
1036 |
+
A24 : C C1p_exo anti
|
1037 |
+
A25 : U C3p_endo syn
|
1038 |
+
A26 : G C3p_endo anti
|
1039 |
+
A27 : A C4p_exo anti
|
1040 |
+
A28 : G C4p_exo anti
|
1041 |
+
A29 : C C2p_exo anti
|
1042 |
+
A30 : C C3p_endo anti
|
1043 |
+
A31 : U C3p_endo anti
|
1044 |
+
A32 : G C2p_exo anti
|
1045 |
+
A33 : G C2p_endo anti
|
1046 |
+
A34 : G C2p_exo syn
|
1047 |
+
A35 : A C3p_exo anti
|
1048 |
+
A36 : G C2p_exo anti
|
1049 |
+
A37 : C C3p_endo anti
|
1050 |
+
A38 : U O4p_endo anti
|
1051 |
+
A39 : C C4p_exo anti
|
1052 |
+
A40 : U C2p_exo anti
|
1053 |
+
A41 : C C3p_endo anti
|
1054 |
+
A42 : U C4p_exo anti
|
1055 |
+
A43 : G C3p_endo anti
|
1056 |
+
A44 : C C3p_endo anti
|
1057 |
+
A45 : C C3p_endo anti
|
1058 |
+
Adjacent stackings ----------------------------------------------
|
1059 |
+
A18-A19 : adjacent_5p upward
|
1060 |
+
A20-A21 : adjacent_5p upward
|
1061 |
+
A26-A27 : adjacent_5p upward
|
1062 |
+
A27-A28 : adjacent_5p upward
|
1063 |
+
A28-A29 : adjacent_5p upward
|
1064 |
+
A36-A37 : adjacent_5p upward
|
1065 |
+
A37-A38 : adjacent_5p upward
|
1066 |
+
A43-A44 : adjacent_5p upward
|
1067 |
+
Non-Adjacent stackings ------------------------------------------
|
1068 |
+
A18-A45 : outward
|
1069 |
+
A20-A43 : outward
|
1070 |
+
A21-A42 : outward
|
1071 |
+
Number of stackings = 11
|
1072 |
+
Number of adjacent stackings = 8
|
1073 |
+
Number of non adjacent stackings = 3
|
1074 |
+
Base-pairs ------------------------------------------------------
|
1075 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond
|
1076 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
1077 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
1078 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
1079 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond
|
1080 |
+
A31-A33 : U-G Ww/O2P pairing
|
1081 |
+
A33-A34 : G-G O2P/Bs adjacent_5p pairing
|
1082 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|
1083 |
+
Residue conformations -------------------------------------------
|
1084 |
+
A17 : G C3p_endo anti
|
1085 |
+
A18 : G C3p_endo anti
|
1086 |
+
A19 : C C3p_endo anti
|
1087 |
+
A20 : A C3p_endo anti
|
1088 |
+
A21 : G C3p_endo anti
|
1089 |
+
A22 : A C2p_exo anti
|
1090 |
+
A23 : U C2p_exo anti
|
1091 |
+
A24 : C C3p_endo anti
|
1092 |
+
A25 : U C3p_endo syn
|
1093 |
+
A26 : G C3p_endo anti
|
1094 |
+
A27 : A C4p_exo anti
|
1095 |
+
A28 : G O4p_endo anti
|
1096 |
+
A29 : C C2p_exo anti
|
1097 |
+
A30 : C O4p_endo anti
|
1098 |
+
A31 : U C3p_endo anti
|
1099 |
+
A32 : G C3p_endo anti
|
1100 |
+
A33 : G C3p_exo anti
|
1101 |
+
A34 : G C3p_endo anti
|
1102 |
+
A35 : A C2p_endo anti
|
1103 |
+
A36 : G C2p_exo anti
|
1104 |
+
A37 : C C3p_endo anti
|
1105 |
+
A38 : U C3p_endo anti
|
1106 |
+
A39 : C C3p_endo anti
|
1107 |
+
A40 : U C2p_exo anti
|
1108 |
+
A41 : C C3p_endo anti
|
1109 |
+
A42 : U C3p_endo anti
|
1110 |
+
A43 : G C3p_endo anti
|
1111 |
+
A44 : C C2p_exo anti
|
1112 |
+
A45 : C C3p_endo anti
|
1113 |
+
Adjacent stackings ----------------------------------------------
|
1114 |
+
A18-A19 : adjacent_5p upward
|
1115 |
+
A19-A20 : adjacent_5p upward
|
1116 |
+
A20-A21 : adjacent_5p upward
|
1117 |
+
A21-A22 : adjacent_5p upward
|
1118 |
+
A23-A24 : adjacent_5p upward
|
1119 |
+
A26-A27 : adjacent_5p upward
|
1120 |
+
A27-A28 : adjacent_5p upward
|
1121 |
+
A37-A38 : adjacent_5p upward
|
1122 |
+
A43-A44 : adjacent_5p upward
|
1123 |
+
Non-Adjacent stackings ------------------------------------------
|
1124 |
+
A18-A45 : outward
|
1125 |
+
A20-A43 : outward
|
1126 |
+
A27-A39 : outward
|
1127 |
+
Number of stackings = 12
|
1128 |
+
Number of adjacent stackings = 9
|
1129 |
+
Number of non adjacent stackings = 3
|
1130 |
+
Base-pairs ------------------------------------------------------
|
1131 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis
|
1132 |
+
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX
|
1133 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
1134 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
1135 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
|
1136 |
+
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond
|
1137 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
1138 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
1139 |
+
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
|
1140 |
+
A29-A36 : C-G Ws/Ww pairing antiparallel cis one_hbond
|
1141 |
+
A31-A32 : U-G Ww/Hw adjacent_5p pairing parallel cis one_hbond
|
1142 |
+
Residue conformations -------------------------------------------
|
1143 |
+
A17 : G C3p_endo anti
|
1144 |
+
A18 : G C2p_exo anti
|
1145 |
+
A19 : C C3p_endo anti
|
1146 |
+
A20 : A C3p_endo anti
|
1147 |
+
A21 : G C2p_exo anti
|
1148 |
+
A22 : A C3p_endo anti
|
1149 |
+
A23 : U C3p_exo anti
|
1150 |
+
A24 : C C3p_endo anti
|
1151 |
+
A25 : U C1p_exo syn
|
1152 |
+
A26 : G C3p_endo anti
|
1153 |
+
A27 : A O4p_endo anti
|
1154 |
+
A28 : G O4p_endo anti
|
1155 |
+
A29 : C C2p_exo anti
|
1156 |
+
A30 : C C2p_exo anti
|
1157 |
+
A31 : U C3p_endo anti
|
1158 |
+
A32 : G C3p_endo anti
|
1159 |
+
A33 : G C2p_endo anti
|
1160 |
+
A34 : G C2p_exo anti
|
1161 |
+
A35 : A C4p_endo anti
|
1162 |
+
A36 : G C2p_exo anti
|
1163 |
+
A37 : C C3p_endo anti
|
1164 |
+
A38 : U C2p_exo anti
|
1165 |
+
A39 : C C3p_endo anti
|
1166 |
+
A40 : U C3p_endo anti
|
1167 |
+
A41 : C C3p_endo anti
|
1168 |
+
A42 : U C2p_exo anti
|
1169 |
+
A43 : G C3p_endo anti
|
1170 |
+
A44 : C C2p_exo anti
|
1171 |
+
A45 : C C3p_endo anti
|
1172 |
+
Adjacent stackings ----------------------------------------------
|
1173 |
+
A17-A18 : adjacent_5p upward
|
1174 |
+
A18-A19 : adjacent_5p upward
|
1175 |
+
A19-A20 : adjacent_5p upward
|
1176 |
+
A20-A21 : adjacent_5p upward
|
1177 |
+
A21-A22 : adjacent_5p upward
|
1178 |
+
A22-A23 : adjacent_5p upward
|
1179 |
+
A26-A27 : adjacent_5p upward
|
1180 |
+
A27-A28 : adjacent_5p upward
|
1181 |
+
A36-A37 : adjacent_5p upward
|
1182 |
+
A39-A40 : adjacent_5p upward
|
1183 |
+
A43-A44 : adjacent_5p upward
|
1184 |
+
A44-A45 : adjacent_5p upward
|
1185 |
+
Non-Adjacent stackings ------------------------------------------
|
1186 |
+
A20-A43 : outward
|
1187 |
+
A21-A42 : outward
|
1188 |
+
A22-A41 : outward
|
1189 |
+
Number of stackings = 15
|
1190 |
+
Number of adjacent stackings = 12
|
1191 |
+
Number of non adjacent stackings = 3
|
1192 |
+
Base-pairs ------------------------------------------------------
|
1193 |
+
A17-A45 : G-C Ww/Ww pairing antiparallel cis
|
1194 |
+
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
|
1195 |
+
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
|
1196 |
+
A21-A41 : G-C Ww/Ww pairing antiparallel cis
|
1197 |
+
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
|
1198 |
+
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
|
1199 |
+
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
|
1200 |
+
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing
|