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1akx_MC
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| 1 |
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Residue conformations -------------------------------------------
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| 2 |
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A16 : G C3p_endo anti
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| 3 |
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A17 : G C2p_exo anti
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| 4 |
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A18 : C C3p_endo anti
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| 5 |
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A19 : C C3p_endo anti
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| 6 |
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A20 : A C3p_endo anti
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| 7 |
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A21 : G C3p_endo anti
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| 8 |
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A22 : A C3p_endo anti
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| 9 |
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A23 : U C2p_endo anti
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| 10 |
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A25 : U C2p_endo anti
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| 11 |
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A26 : G C2p_exo anti
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| 12 |
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A27 : A C2p_exo anti
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| 13 |
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A28 : G C3p_endo anti
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| 14 |
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A29 : C C3p_endo anti
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| 15 |
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A30 : C C2p_endo anti
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| 16 |
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A31 : U C2p_endo anti
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| 17 |
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A32 : G C3p_exo anti
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| 18 |
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A33 : G C2p_endo anti
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| 19 |
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A34 : G C2p_endo syn
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| 20 |
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A35 : A C2p_endo anti
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| 21 |
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A36 : G C2p_exo anti
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| 22 |
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A37 : C C3p_endo anti
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| 23 |
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A38 : U C3p_endo anti
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| 24 |
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A39 : C C3p_endo anti
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| 25 |
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A40 : U C3p_endo anti
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| 26 |
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A41 : C C3p_endo anti
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| 27 |
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A42 : U C3p_endo anti
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| 28 |
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A43 : G C3p_endo anti
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| 29 |
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A44 : G C3p_endo anti
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| 30 |
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A45 : C C3p_endo anti
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| 31 |
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A46 : C C3p_endo anti
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| 32 |
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A47 : ARG
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| 33 |
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Adjacent stackings ----------------------------------------------
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| 34 |
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A16-A17 : adjacent_5p upward
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| 35 |
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A17-A18 : adjacent_5p upward
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| 36 |
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A20-A21 : adjacent_5p upward
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| 37 |
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A21-A22 : adjacent_5p upward
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| 38 |
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A26-A27 : adjacent_5p upward
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| 39 |
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A27-A28 : adjacent_5p upward
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| 40 |
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A28-A29 : adjacent_5p upward
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| 41 |
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A29-A30 : adjacent_5p upward
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| 42 |
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A36-A37 : adjacent_5p upward
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| 43 |
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A37-A38 : adjacent_5p upward
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| 44 |
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A38-A39 : adjacent_5p upward
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| 45 |
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A39-A40 : adjacent_5p upward
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| 46 |
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A40-A41 : adjacent_5p upward
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| 47 |
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A42-A43 : adjacent_5p upward
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| 48 |
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A43-A44 : adjacent_5p upward
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| 49 |
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A44-A45 : adjacent_5p upward
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| 50 |
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A45-A46 : adjacent_5p upward
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| 51 |
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Non-Adjacent stackings ------------------------------------------
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| 52 |
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A20-A43 : outward
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| 53 |
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Number of stackings = 18
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| 54 |
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Number of adjacent stackings = 17
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| 55 |
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Number of non adjacent stackings = 1
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| 56 |
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Base-pairs ------------------------------------------------------
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| 57 |
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A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX
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| 58 |
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A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX
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| 59 |
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A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX
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| 60 |
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A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX
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| 61 |
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A20-A42 : A-U Ww/Ww pairing antiparallel cis XX
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| 62 |
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A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX
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| 63 |
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A22-A40 : A-U Ww/Ww pairing antiparallel cis XX
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| 64 |
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A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX
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| 65 |
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A27-A38 : A-U Ww/Ww pairing antiparallel cis XX
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| 66 |
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A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX
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| 67 |
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A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX
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| 68 |
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A30-A31 : C-U O2P/Ww adjacent_5p pairing
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