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1ajl_MC
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| 1 |
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Residue conformations -------------------------------------------
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| 2 |
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A2 : G C3p_endo anti
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| 3 |
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A3 : G C3p_endo anti
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| 4 |
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A4 : U C3p_endo anti
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| 5 |
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A5 : A C3p_endo anti
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A6 : A O4p_endo anti
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A7 : U C2p_endo anti
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A8 : A C2p_endo anti
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A9 : A O4p_endo anti
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A10 : G C3p_endo anti
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A11 : C C3p_endo anti
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A12 : U C3p_endo anti
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| 13 |
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A13 : C C3p_endo anti
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| 14 |
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B18 : G C3p_endo anti
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B19 : A C3p_endo anti
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B20 : G C3p_endo anti
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B21 : U C3p_endo anti
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B22 : A C3p_endo anti
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B23 : C C3p_endo anti
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| 20 |
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B24 : C C3p_endo anti
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Adjacent stackings ----------------------------------------------
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A3-A4 : adjacent_5p upward
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A5-A6 : adjacent_5p upward
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A8-A9 : adjacent_5p upward
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A10-A11 : adjacent_5p upward
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A12-A13 : adjacent_5p upward
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B18-B19 : adjacent_5p upward
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B19-B20 : adjacent_5p upward
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| 29 |
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B20-B21 : adjacent_5p upward
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| 30 |
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B22-B23 : adjacent_5p upward pairing
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B23-B24 : adjacent_5p upward
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Non-Adjacent stackings ------------------------------------------
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A5-B22 : outward
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Number of stackings = 11
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Number of adjacent stackings = 10
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Number of non adjacent stackings = 1
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Base-pairs ------------------------------------------------------
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A2-B21 : G-U Hh/O2P pairing
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A2-B24 : G-C Ww/Ww pairing antiparallel cis XIX
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| 40 |
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A3-B23 : G-C Ww/Ww pairing antiparallel cis XIX
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| 41 |
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A4-B22 : U-A Ws/Wh pairing antiparallel cis one_hbond 46
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A6-A9 : A-A O2'/Bh pairing
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| 43 |
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A7-A8 : U-A O2P/Bh adjacent_5p pairing
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| 44 |
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A10-B21 : G-U Ww/Ws pairing antiparallel cis XXVIII
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| 45 |
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A11-B20 : C-G Ww/Ww pairing antiparallel cis
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| 46 |
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A12-B19 : U-A Ww/Ww pairing antiparallel cis XX
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| 47 |
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A13-B18 : C-G Ww/Ww pairing antiparallel cis XIX
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| 48 |
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B22-B23 : A-C O2P/Bh adjacent_5p upward pairing
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