Residue conformations ------------------------------------------- A2 : G C3p_endo anti A3 : G C3p_endo anti A4 : U C3p_endo anti A5 : A C3p_endo anti A6 : A C3p_exo anti A7 : U C2p_endo anti A8 : A C2p_endo anti A9 : A O4p_endo anti A10 : G C3p_endo anti A11 : C C2p_exo anti A12 : U C3p_endo anti A13 : C C3p_endo anti B18 : G C3p_endo anti B19 : A C3p_endo anti B20 : G C3p_endo anti B21 : U C3p_endo anti B22 : A C3p_endo anti B23 : C C3p_endo anti B24 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A3-A4 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward pairing A12-A13 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B22-B23 : adjacent_5p upward pairing B23-B24 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 10 Number of adjacent stackings = 10 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A2-B24 : G-C Ww/Ww pairing antiparallel cis XIX A3-B23 : G-C Ww/Ww pairing antiparallel cis A4-B22 : U-A Ws/Wh pairing antiparallel cis one_hbond 46 A7-A8 : U-A O2P/Bh O2P/Hh adjacent_5p pairing A9-A10 : A-G O2'/C8 adjacent_5p upward pairing A10-B21 : G-U Ww/Ws pairing antiparallel cis XXVIII A11-B20 : C-G Ww/Ww pairing antiparallel cis XIX A12-B19 : U-A Ww/Ww pairing antiparallel cis XX A13-B18 : C-G Ww/Ww pairing antiparallel cis XIX B22-B23 : A-C O2P/Bh adjacent_5p upward pairing