Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G O4p_endo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward B23-B24 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward B23-B24 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward B23-B24 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 22 Number of adjacent stackings = 18 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : C O4p_endo anti A2 : G C1p_exo anti A3 : C O4p_endo anti A4 : G O4p_endo anti A5 : T O4p_endo anti A6 : TSP A7 : TCP A8 : T O4p_endo anti A9 : G O4p_endo anti A10 : C O4p_endo anti A11 : G O4p_endo anti A12 : C O4p_endo anti B13 : G C4p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : C C3p_endo anti B17 : A C3p_endo anti B18 : A C3p_endo anti B19 : A C3p_endo anti B20 : A C3p_endo anti B21 : C C3p_endo anti B22 : G C3p_endo anti B23 : C C3p_endo anti B24 : G C4p_exo anti Adjacent stackings ---------------------------------------------- A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward B13-B14 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward B19-B20 : adjacent_5p upward B20-B21 : adjacent_5p upward B21-B22 : adjacent_5p upward B22-B23 : adjacent_5p upward B23-B24 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-B24 : outward A4-B22 : outward A9-B17 : outward A11-B15 : outward Number of stackings = 21 Number of adjacent stackings = 17 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A1-B24 : C-G Ww/Ww pairing antiparallel cis XIX A2-B23 : G-C Ww/Ww pairing antiparallel cis XIX A3-B22 : C-G Ww/Ww pairing antiparallel cis XIX A4-B21 : G-C Ww/Ww pairing antiparallel cis XIX A5-B20 : T-A Ww/Ww pairing antiparallel cis A8-B17 : T-A Ww/Ww pairing antiparallel cis A9-B16 : G-C Ww/Ww pairing antiparallel cis XIX A10-B15 : C-G Ww/Ww pairing antiparallel cis XIX A11-B14 : G-C Ww/Ww pairing antiparallel cis XIX A12-B13 : C-G Ww/Ww pairing antiparallel cis XIX