Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C2p_exo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C2p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Ww/O2P pairing 
A9-A13 : G-A Bs/Hh Bs/O2P pairing antiparallel trans one_hbond 
A9-B6 : G-ARG pairing one_hbond 
A15-B3 : G-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C3p_endo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Ww/O2P pairing 
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond 
A9-B6 : G-ARG pairing one_hbond 
A15-B3 : G-LYS pairing 
Residue conformations -------------------------------------------
A4 : G C3p_endo anti
A5 : C C2p_exo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C3p_exo anti
A11 : C C2p_endo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 9
Number of adjacent stackings = 7
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Bs/O2P pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A15-B3 : G-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C2p_exo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A13 : G-A Bs/Hh pairing antiparallel trans one_hbond 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C2p_exo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A Ww/O2P pairing 
A9-A13 : G-A Ws/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C2p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Ws/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C2p_exo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C2p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Ww/O2P pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A Ww/O2P pairing 
A9-A13 : G-A Ws/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C2p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Ww/O2P pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Bs/O2P pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C2p_exo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/Hh pairing antiparallel trans one_hbond 
A9-B6 : G-ARG pairing one_hbond 
A14-B3 : A-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C3p_endo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A C1p_exo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A Ww/O2P pairing 
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C3p_endo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C3p_endo anti
A17 : G C2p_exo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh Ww/O2P pairing 
A9-A13 : G-A Ws/O2P pairing 
A9-B6 : G-ARG pairing one_hbond 
A15-B3 : G-LYS pairing one_hbond 
Residue conformations -------------------------------------------
A4 : G C4p_exo anti
A5 : C C2p_exo anti
A6 : G C2p_exo anti
A7 : C C3p_endo anti
A8 : U C2p_exo anti
A9 : G C3p_endo anti
A10 : A O4p_endo anti
A11 : C C1p_exo anti
A12 : A C3p_endo anti
A13 : A C3p_endo anti
A14 : A C2p_exo anti
A15 : G C2p_exo anti
A16 : C C2p_exo anti
A17 : G C3p_endo anti
A18 : C C3p_endo anti
B1 : ASN
B2 : ALA
B3 : LYS
B4 : THR
B5 : ARG
B6 : ARG
B7 : HIS
B8 : GLU
B9 : ARG
B10 : ARG
B11 : ARG
B12 : LYS
B13 : LEU
B14 : ALA
B15 : ILE
B16 : GLU
B17 : ARG
B18 : ASP
B19 : THR
Adjacent stackings ----------------------------------------------
A4-A5 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
A13-A14 : adjacent_5p upward 
A14-A15 : adjacent_5p upward 
A15-A16 : adjacent_5p upward 
A17-A18 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A6-A17 : outward 
A10-A12 : upward 
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX 
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX 
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX 
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX 
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX 
A9-A12 : G-A O2'/Hh pairing 
A9-A13 : G-A Bs/O2P pairing 
A9-B6 : G-ARG pairing one_hbond