Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A7-A8 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 23
Number of adjacent stackings = 19
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A7-A8 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 23
Number of adjacent stackings = 19
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A7-A8 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 23
Number of adjacent stackings = 19
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A7-A8 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B7-B8 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 26
Number of adjacent stackings = 22
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 24
Number of adjacent stackings = 20
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 24
Number of adjacent stackings = 20
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 21
Number of adjacent stackings = 17
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 21
Number of adjacent stackings = 17
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C2p_exo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 24
Number of adjacent stackings = 20
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C2p_exo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 23
Number of adjacent stackings = 19
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_endo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C2p_exo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 24
Number of adjacent stackings = 20
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A1 : C C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : A C2p_exo anti
A7 : U C3p_endo anti
A8 : U C3p_endo anti
A9 : U C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
B1 : C C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : A C3p_endo anti
B7 : U C3p_endo anti
B8 : U C3p_endo anti
B9 : U C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A4-A5 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
B1-B2 : adjacent_5p upward 
B2-B3 : adjacent_5p upward 
B3-B4 : adjacent_5p upward 
B4-B5 : adjacent_5p upward 
B5-B6 : adjacent_5p upward 
B6-B7 : adjacent_5p upward 
B8-B9 : adjacent_5p upward 
B9-B10 : adjacent_5p upward 
B10-B11 : adjacent_5p upward 
B11-B12 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A2-B12 : outward 
A4-B10 : outward 
A10-B4 : outward 
A12-B2 : outward 
Number of stackings = 22
Number of adjacent stackings = 18
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A1-B12 : C-G Ww/Ww pairing antiparallel cis XIX 
A2-B11 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B10 : C-G Ww/Ww pairing antiparallel cis XIX 
A4-B9 : A-U Ww/Ww pairing antiparallel cis XX 
A5-B8 : A-U Ww/Ww pairing antiparallel cis XX 
A6-B7 : A-U Ww/Ww pairing antiparallel cis XX 
A7-B6 : U-A Ww/Ww pairing antiparallel cis XX 
A8-B5 : U-A Ww/Ww pairing antiparallel cis XX 
A9-B4 : U-A Ww/Ww pairing antiparallel cis XX 
A10-B3 : G-C Ww/Ww pairing antiparallel cis XIX 
A11-B2 : C-G Ww/Ww pairing antiparallel cis XIX 
A12-B1 : G-C Ww/Ww pairing antiparallel cis XIX