Residue conformations ------------------------------------------- A1 : G C1p_exo anti A2 : T O4p_endo anti A3 : C O4p_endo anti A4 : A C1p_exo anti A5 : C O4p_endo anti A6 : A C1p_exo anti A7 : T C1p_exo anti A8 : G O4p_endo anti B9 : C C3p_endo anti B10 : A C3p_endo anti B11 : U C3p_endo anti B12 : G C3p_endo anti B13 : U C2p_exo anti B14 : G C3p_endo anti B15 : A C3p_endo anti B16 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A6-A7 : adjacent_5p upward A7-A8 : adjacent_5p upward B9-B10 : adjacent_5p upward B10-B11 : adjacent_5p upward B12-B13 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A4-B14 : outward A6-B12 : outward A8-B10 : outward Number of stackings = 14 Number of adjacent stackings = 11 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A1-B16 : G-C Ww/Ww pairing antiparallel cis XIX A2-B15 : T-A Ww/Ww pairing antiparallel cis A3-B14 : C-G Ww/Ww pairing antiparallel cis XIX A4-B13 : A-U Ww/Ww pairing antiparallel cis XX A5-B12 : C-G Ww/Ww pairing antiparallel cis XIX A6-B11 : A-U Ww/Ww pairing antiparallel cis XX A7-B10 : T-A Ww/Ww pairing antiparallel cis A8-B9 : G-C Ww/Ww pairing antiparallel cis XIX