Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G C4p_exo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C3p_endo anti A10 : A C2p_exo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Bh pairing A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Ww O2'/Bh pairing A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 8 Number of adjacent stackings = 8 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Bh pairing A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C2p_exo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C O4p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 6 Number of adjacent stackings = 6 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Ww O2'/Bh pairing A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C2p_exo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 8 Number of adjacent stackings = 8 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Ww O2'/Bh pairing A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C2p_exo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C3p_endo anti A10 : A C2p_exo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A O2'/Bh pairing A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C3p_endo anti A10 : A C2p_exo anti A11 : C C3p_endo anti A12 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A7 : U-A O2'/Hh pairing A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 7 Number of adjacent stackings = 7 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A7 : U-A O2'/Hh pairing A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46 A6-A7 : G-A O2P/Hh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C2p_endo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 7 Number of adjacent stackings = 7 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A7 : U-A O2'/Hh pairing A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46 A6-A7 : G-A O2P/Hh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C4p_exo anti A5 : U C3p_endo anti A6 : G O4p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C2p_exo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward pairing A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 9 Number of adjacent stackings = 9 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A6 : U-G O2P/Ww adjacent_5p inward pairing A5-A7 : U-A O2'/Hh pairing A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C3p_exo anti A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C O4p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward pairing A7-A8 : adjacent_5p upward pairing A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward pairing A10-A11 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 8 Number of adjacent stackings = 8 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A6 : U-G O2'/C8 adjacent_5p inward pairing A5-A8 : U-A O2'/Ww O2'/Bh pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing A7-A9 : A-C Ss/O2P pairing A9-A10 : C-A O2'/C8 adjacent_5p upward pairing Residue conformations ------------------------------------------- A1 : G O4p_exo anti A2 : G C3p_endo anti A3 : U C3p_endo anti A4 : G C3p_endo anti A5 : U C3p_endo anti A6 : G C3p_endo syn A7 : A C3p_exo syn A8 : A C2p_endo syn A9 : C C4p_exo anti A10 : A C3p_endo anti A11 : C C3p_endo anti A12 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p inward A8-A9 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 7 Number of adjacent stackings = 7 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX A3-A10 : U-A Ww/Ww pairing antiparallel cis XX A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond A6-A7 : G-A O2P/Bh adjacent_5p pairing A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing A9-A10 : C-A O2'/C8 adjacent_5p pairing