Residue conformations ------------------------------------------- A68 : G C3p_endo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C3p_endo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C2p_exo anti A100 : G C3p_endo anti A101 : A C2p_exo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A82-A83 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 31 Number of adjacent stackings = 27 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A102 : G-G Hh/O2P pairing A72-A103 : G-U Ww/O2P Bs/O2P pairing A72-A104 : G-A Ss/Hh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Hh/Ww pairing antiparallel trans one_hbond 91 A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C2p_exo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C2p_exo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A82-A83 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A91-A92 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward A107-A108 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 34 Number of adjacent stackings = 30 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C3p_endo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C2p_exo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A91-A92 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 30 Number of adjacent stackings = 26 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C2p_exo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C3p_endo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A91-A92 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward A107-A108 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 32 Number of adjacent stackings = 28 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C2p_exo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C2p_exo anti A99 : A C3p_endo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward A107-A108 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 32 Number of adjacent stackings = 28 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A98 : U-G O2P/Ww pairing A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww O2P/Bh adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C3p_endo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C3p_endo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C2p_exo anti A99 : A C3p_endo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A90-A91 : adjacent_5p upward A91-A92 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 31 Number of adjacent stackings = 27 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A75-A101 : G-A Wh/Wh pairing antiparallel cis one_hbond A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A98 : U-G O2P/Ww O2P/Bs pairing A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis one_hbond 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C2p_exo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C2p_exo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A91-A92 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward A107-A108 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 33 Number of adjacent stackings = 29 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C3p_endo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C3p_endo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A90-A91 : adjacent_5p upward A91-A92 : adjacent_5p upward A93-A94 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 32 Number of adjacent stackings = 28 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss Bh/O2' pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing Residue conformations ------------------------------------------- A68 : G C3p_endo anti A69 : G C3p_endo anti A70 : C C3p_endo anti A71 : C C3p_endo anti A72 : G C3p_endo anti A73 : A C2p_exo anti A74 : U C3p_endo anti A75 : G C3p_endo anti A76 : G C3p_endo anti A77 : U C3p_endo anti A78 : A C3p_endo anti A79 : G C3p_endo anti A80 : U C3p_endo anti A81 : G C3p_endo anti A82 : U C3p_endo anti A83 : G C3p_endo anti A84 : G C3p_endo anti A85 : G C3p_endo anti A86 : G C3p_endo anti A87 : U C4p_exo anti A88 : C C2p_endo anti A89 : U C4p_exo anti A90 : C C2p_exo anti A91 : C C3p_endo anti A92 : C C3p_endo anti A93 : C C3p_endo anti A94 : A C3p_endo anti A95 : U C3p_endo anti A96 : G C3p_endo anti A97 : C C3p_endo anti A98 : G C3p_endo anti A99 : A C3p_endo anti A100 : G C3p_endo anti A101 : A C3p_endo anti A102 : G C3p_endo anti A103 : U C3p_endo anti A104 : A C3p_endo anti A105 : G C3p_endo anti A106 : G C3p_endo anti A107 : C C3p_endo anti A108 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A68-A69 : adjacent_5p upward A69-A70 : adjacent_5p upward A70-A71 : adjacent_5p upward A71-A72 : adjacent_5p upward A73-A74 : adjacent_5p upward A74-A75 : adjacent_5p upward A75-A76 : adjacent_5p upward A76-A77 : adjacent_5p upward A77-A78 : adjacent_5p upward A78-A79 : adjacent_5p upward A79-A80 : adjacent_5p upward A81-A82 : adjacent_5p upward A83-A84 : adjacent_5p upward A84-A85 : adjacent_5p upward A85-A86 : adjacent_5p upward A91-A92 : adjacent_5p upward A94-A95 : adjacent_5p upward A96-A97 : adjacent_5p upward A97-A98 : adjacent_5p upward A99-A100 : adjacent_5p upward A100-A101 : adjacent_5p upward A101-A102 : adjacent_5p upward A102-A103 : adjacent_5p upward A103-A104 : adjacent_5p upward A104-A105 : adjacent_5p upward A105-A106 : adjacent_5p upward A106-A107 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A73-A104 : outward A78-A99 : outward A81-A96 : outward A83-A94 : outward Number of stackings = 31 Number of adjacent stackings = 27 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A68-A108 : G-C Ww/Ww pairing antiparallel cis XIX A69-A107 : G-C Ww/Ww pairing antiparallel cis XIX A70-A106 : C-G Ww/Ww pairing antiparallel cis XIX A71-A105 : C-G Ww/Ww pairing antiparallel cis XIX A72-A104 : G-A Ss/Hh O2'/Bh pairing antiparallel trans XI A73-A103 : A-U Hh/Ws pairing antiparallel trans XXIV A74-A102 : U-G Bh/Ww pairing antiparallel trans 91 A75-A101 : G-A Hw/Wh pairing antiparallel cis one_hbond 64 A76-A100 : G-G Ww/Bh pairing antiparallel trans 115 A77-A99 : U-A Ws/Hh pairing antiparallel trans XXIV A78-A98 : A-G Hh/Ss pairing antiparallel trans XI A79-A97 : G-C Ww/Ww pairing antiparallel cis XIX A80-A96 : U-G Ws/Ww pairing antiparallel cis XXVIII A81-A95 : G-U Ww/Ws pairing antiparallel cis XXVIII A82-A94 : U-A Ww/Ww pairing antiparallel cis XX A83-A93 : G-C Ww/Ww pairing antiparallel cis XIX A84-A92 : G-C Ww/Ww pairing antiparallel cis XIX A85-A91 : G-C Ww/Ww pairing antiparallel cis XIX A86-A90 : G-C Bs/Ww pairing antiparallel cis 128 A89-A90 : U-C O2P/Ww adjacent_5p pairing