Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : A C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : G C3p_endo anti A6 : G C3p_endo anti A7 : G C3p_endo anti A8 : G C3p_endo anti A9 : A C3p_endo anti A10 : A C3p_endo anti A11 : A C3p_endo anti A12 : C C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : U C3p_endo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : C C3p_endo anti A19 : NCO Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A6-A7 : adjacent_5p upward A7-A8 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A13-A14 : adjacent_5p upward A14-A15 : adjacent_5p upward A15-A16 : adjacent_5p upward A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A4-A16 : outward Number of stackings = 17 Number of adjacent stackings = 16 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A1-A18 : G-C Ww/Ww pairing antiparallel cis XIX A2-A17 : A-U Ww/Ww pairing antiparallel cis XX A3-A16 : C-G Ww/Ww pairing antiparallel cis XIX A4-A15 : A-U Ww/Ww pairing antiparallel cis XX A5-A14 : G-U Ww/Ws pairing antiparallel cis XXVIII A6-A13 : G-U Ww/Ws pairing antiparallel cis XXVIII A7-A12 : G-C Ww/Ww pairing antiparallel cis XIX A8-A10 : G-A Ss/O2P pairing A8-A11 : G-A Ss/Hh O2'/Bh Bs/O2P pairing antiparallel trans XI