Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C3p_endo anti A24 : C C2p_endo anti A25 : U C3p_endo anti A26 : G C3p_endo anti A27 : A O4p_endo anti A28 : G O4p_endo anti A29 : C C2p_exo anti A30 : C C4p_endo syn A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C3p_exo anti A34 : G C2p_exo anti A35 : A C3p_exo anti A36 : G C3p_endo anti A37 : C C2p_exo anti A38 : U C2p_exo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A28-A38 : outward Number of stackings = 16 Number of adjacent stackings = 14 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A17-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis A29-A36 : C-G Ww/Wh pairing antiparallel cis one_hbond A31-A33 : U-G O2P/Hh pairing A32-A34 : G-G O2'/Bs pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C4p_exo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_exo anti A24 : C C3p_endo anti A25 : U C2p_exo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_exo anti A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C2p_exo anti A34 : G C3p_endo syn A35 : A C3p_exo anti A36 : G C3p_endo anti A37 : C C2p_exo anti A38 : U C2p_exo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A23-A24 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A22-A41 : outward A27-A39 : outward Number of stackings = 16 Number of adjacent stackings = 12 Number of non adjacent stackings = 4 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A24 : A-C O2P/Bh pairing A22-A40 : A-U Ww/Ws pairing antiparallel cis A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G Ws/Sw pairing antiparallel cis one_hbond 128 A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing A34-A35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C2p_exo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_exo anti A24 : C C3p_exo anti A25 : U O4p_endo syn A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_exo anti A31 : U C3p_endo anti A32 : G O4p_endo anti A33 : G C3p_exo anti A34 : G C3p_endo syn A35 : A O4p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A27-A39 : outward Number of stackings = 11 Number of adjacent stackings = 9 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis one_hbond A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond A33-A34 : G-G O2P/Bs adjacent_5p pairing A34-A35 : G-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C4p_exo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C2p_exo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C3p_endo anti A24 : C C2p_endo anti A25 : U C2p_exo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_exo anti A31 : U C4p_exo anti A32 : G C1p_endo anti A33 : G C2p_endo anti A34 : G C3p_endo anti A35 : A O4p_endo anti A36 : G C2p_exo anti A37 : C C2p_exo anti A38 : U O4p_endo anti A39 : C C4p_exo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C2p_exo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A23-A24 : adjacent_5p upward A27-A28 : adjacent_5p upward A29-A30 : adjacent_5p upward A34-A35 : adjacent_5p upward A36-A37 : adjacent_5p upward A40-A41 : adjacent_5p upward A41-A42 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A34-A36 : upward Number of stackings = 18 Number of adjacent stackings = 15 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A24 : A-C O2P/Bh pairing A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C2p_exo anti A21 : G C2p_exo anti A22 : A C1p_exo anti A23 : U C3p_exo syn A24 : C C3p_exo anti A25 : U C2p_endo anti A26 : G C2p_exo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_exo anti A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C3p_endo anti A34 : G C3p_endo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C2p_exo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C2p_exo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A21-A42 : outward A22-A24 : upward A22-A41 : outward Number of stackings = 15 Number of adjacent stackings = 10 Number of non adjacent stackings = 5 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A23-A24 : U-C O2'/Hh adjacent_5p pairing A23-A41 : U-C Ww/O2' pairing A24-A40 : C-U Ws/Ww pairing antiparallel cis one_hbond 106 A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 A33-A34 : G-G O2'/Ss adjacent_5p pairing A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C4p_exo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C3p_exo anti A24 : C C3p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C O4p_endo anti A30 : C O4p_endo anti A31 : U O4p_endo anti A32 : G C3p_endo anti A33 : G C3p_exo anti A34 : G C1p_endo syn A35 : A C2p_exo anti A36 : G C2p_exo anti A37 : C C2p_exo anti A38 : U C2p_exo anti A39 : C C2p_exo anti A40 : U C3p_endo anti A41 : C C4p_exo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A32-A33 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 13 Number of adjacent stackings = 12 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis A26-A41 : G-C Ww/O2P pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A31-A32 : U-G O2'/C8 adjacent_5p pairing A32-A34 : G-G O2'/Bs O2'/Ss pairing A34-A35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C2p_exo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C2p_exo anti A23 : U C2p_exo anti A24 : C C2p_endo anti A25 : U C3p_endo anti A26 : G C4p_exo anti A27 : A C4p_exo anti A28 : G C4p_exo anti A29 : C C4p_exo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C2p_exo anti A33 : G C3p_endo anti A34 : G C3p_endo anti A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward A34-A36 : upward Number of stackings = 13 Number of adjacent stackings = 10 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A25-A27 : U-A Ws/Hw pairing parallel cis one_hbond 47 A26-A39 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A30-A33 : C-G Ww/Sw pairing antiparallel cis one_hbond 125 A32-A33 : G-G O2'/C8 adjacent_5p pairing A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C2p_exo anti A23 : U C3p_endo anti A24 : C C3p_endo anti A25 : U C4p_exo syn A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C4p_exo anti A29 : C O4p_endo anti A30 : C O4p_endo anti A31 : U C3p_endo anti A32 : G C3p_exo anti A33 : G C3p_endo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C O4p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C4p_exo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A23-A24 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A22-A41 : outward A28-A38 : outward Number of stackings = 16 Number of adjacent stackings = 13 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A31-A32 : U-G O2'/Ss adjacent_5p pairing A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109 A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C2p_exo anti A19 : C C2p_exo anti A20 : A C2p_exo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_exo anti A24 : C C2p_endo anti A25 : U C2p_endo syn A26 : G C2p_exo anti A27 : A C4p_exo anti A28 : G C4p_exo anti A29 : C C2p_exo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C2p_exo anti A33 : G C2p_exo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C2p_exo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A23-A24 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A40-A41 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward Number of stackings = 13 Number of adjacent stackings = 11 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A33-A34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C2p_exo anti A23 : U C3p_exo anti A24 : C C3p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A O4p_endo anti A28 : G O4p_endo anti A29 : C C2p_exo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C3p_exo anti A33 : G C2p_endo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C O4p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A30-A31 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A40-A41 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward A28-A38 : outward Number of stackings = 17 Number of adjacent stackings = 14 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A29-A36 : C-G Ww/Ww pairing antiparallel cis A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C2p_exo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C1p_endo syn A23 : U C2p_exo anti A24 : C C2p_exo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C4p_exo anti A28 : G C3p_endo anti A29 : C C4p_exo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C3p_exo anti A33 : G C2p_exo anti A34 : G C2p_exo anti A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C O4p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C4p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A23-A24 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A21-A42 : outward Number of stackings = 12 Number of adjacent stackings = 9 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis A26-A39 : G-C Ww/Ww pairing antiparallel cis A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A30-A34 : C-G O2'/Bs pairing A33-A34 : G-G O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C2p_exo anti A19 : C C3p_endo anti A20 : A C2p_exo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C3p_endo anti A24 : C C2p_endo anti A25 : U C3p_endo anti A26 : G C2p_exo anti A27 : A C4p_exo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_exo anti A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C3p_endo anti A34 : G C1p_endo anti A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C O4p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C2p_exo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A34-A36 : upward Number of stackings = 15 Number of adjacent stackings = 13 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A30-A34 : C-G O2'/Ww pairing A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C3p_endo anti A19 : C C3p_endo anti A20 : A C2p_exo anti A21 : G C2p_exo anti A22 : A O4p_endo syn A23 : U C4p_endo anti A24 : C C3p_endo anti A25 : U C3p_endo syn A26 : G C3p_endo anti A27 : A C2p_exo anti A28 : G C4p_exo anti A29 : C C2p_exo anti A30 : C C3p_endo syn A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C3p_exo anti A34 : G C3p_endo anti A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C4p_exo anti A39 : C O4p_endo anti A40 : U C2p_exo anti A41 : C C4p_exo anti A42 : U C4p_exo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A37-A38 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward A27-A39 : outward Number of stackings = 12 Number of adjacent stackings = 9 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A22-A41 : A-C Bh/O2' pairing A23-A40 : U-U Ww/Wh pairing antiparallel cis one_hbond A23-A41 : U-C Hw/Wh pairing antiparallel cis one_hbond 102 A25-A26 : U-G O2'/Hh adjacent_5p pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond A29-A30 : C-C Ss/Hh adjacent_5p pairing antiparallel trans one_hbond A29-A36 : C-G Ww/Ww pairing antiparallel cis Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C2p_exo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_exo anti A24 : C C3p_endo anti A25 : U C3p_endo anti A26 : G C3p_endo anti A27 : A C4p_exo anti A28 : G C3p_endo anti A29 : C C4p_exo anti A30 : C C1p_exo anti A31 : U O4p_endo anti A32 : G C2p_exo anti A33 : G C2p_endo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U O4p_endo anti A39 : C C4p_exo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A23-A24 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward pairing A32-A33 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward Number of stackings = 16 Number of adjacent stackings = 14 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A19-A43 : C-G Ww/Ww pairing antiparallel cis A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis A22-A24 : A-C O2P/Bh pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A29-A30 : C-C O2P/Bh adjacent_5p upward pairing A29-A36 : C-G Wh/Wh pairing antiparallel cis one_hbond A34-A35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G O4p_endo anti A18 : G C2p_exo anti A19 : C C4p_exo anti A20 : A C4p_exo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C3p_endo anti A24 : C C3p_endo anti A25 : U C3p_endo syn A26 : G C2p_exo anti A27 : A C4p_exo anti A28 : G C4p_exo anti A29 : C O4p_endo anti A30 : C C3p_endo anti A31 : U O4p_endo anti A32 : G C3p_endo anti A33 : G C2p_endo anti A34 : G C1p_endo anti A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C O4p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C2p_exo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward Number of stackings = 14 Number of adjacent stackings = 12 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A30-A34 : C-G O2'/Bs pairing A33-A34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C2p_exo anti A18 : G C2p_exo anti A19 : C C3p_endo anti A20 : A C2p_exo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C3p_exo anti A24 : C C3p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C2p_exo anti A33 : G C2p_exo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U O4p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U O4p_endo anti A43 : G C2p_exo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 10 Number of adjacent stackings = 9 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis A22-A23 : A-U Ss/Hh adjacent_5p pairing antiparallel trans one_hbond A22-A24 : A-C O2P/Bh pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A29-A36 : C-G Ww/Ww pairing antiparallel cis Residue conformations ------------------------------------------- A17 : G C4p_exo anti A18 : G C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C4p_exo anti A23 : U C2p_exo anti A24 : C C3p_endo anti A25 : U C2p_endo anti A26 : G C2p_exo anti A27 : A O4p_endo anti A28 : G O4p_endo anti A29 : C C2p_exo anti A30 : C C2p_exo anti A31 : U C4p_endo anti A32 : G C2p_exo anti A33 : G C3p_endo anti A34 : G O4p_exo anti A35 : A C1p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U O4p_endo anti A39 : C O4p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C4p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A22-A41 : outward Number of stackings = 13 Number of adjacent stackings = 11 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A26-A39 : G-C Ww/Ww pairing antiparallel cis A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ws/Ws pairing antiparallel cis one_hbond A28-A38 : G-U Bs/O2' pairing A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A33 : C-G O2'/Ss O2'/C8 pairing A31-A32 : U-G O2P/Hh adjacent_5p pairing A31-A33 : U-G O2P/Hh pairing A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C3p_endo anti A19 : C C2p_exo anti A20 : A C2p_exo anti A21 : G C2p_exo anti A22 : A C1p_endo syn A23 : U C2p_exo anti A24 : C C1p_exo anti A25 : U C3p_endo syn A26 : G C3p_endo anti A27 : A C4p_exo anti A28 : G C4p_exo anti A29 : C C2p_exo anti A30 : C C3p_endo anti A31 : U C3p_endo anti A32 : G C2p_exo anti A33 : G C2p_endo anti A34 : G C2p_exo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U O4p_endo anti A39 : C C4p_exo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C4p_exo anti A43 : G C3p_endo anti A44 : C C3p_endo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A21-A42 : outward Number of stackings = 11 Number of adjacent stackings = 8 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond A31-A33 : U-G Ww/O2P pairing A33-A34 : G-G O2P/Bs adjacent_5p pairing A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_exo anti A24 : C C3p_endo anti A25 : U C3p_endo syn A26 : G C3p_endo anti A27 : A C4p_exo anti A28 : G O4p_endo anti A29 : C C2p_exo anti A30 : C O4p_endo anti A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C3p_exo anti A34 : G C3p_endo anti A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A23-A24 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A37-A38 : adjacent_5p upward A43-A44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A18-A45 : outward A20-A43 : outward A27-A39 : outward Number of stackings = 12 Number of adjacent stackings = 9 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ws/Ww pairing antiparallel cis one_hbond A31-A32 : U-G Ww/Hw adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- A17 : G C3p_endo anti A18 : G C2p_exo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C3p_exo anti A24 : C C3p_endo anti A25 : U C1p_exo syn A26 : G C3p_endo anti A27 : A O4p_endo anti A28 : G O4p_endo anti A29 : C C2p_exo anti A30 : C C2p_exo anti A31 : U C3p_endo anti A32 : G C3p_endo anti A33 : G C2p_endo anti A34 : G C2p_exo anti A35 : A C4p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C3p_endo anti A44 : C C2p_exo anti A45 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A22-A23 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A36-A37 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward A22-A41 : outward Number of stackings = 15 Number of adjacent stackings = 12 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing