Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A41-A42 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A30-A34 : inward pairing A30-A36 : outward Number of stackings = 19 Number of adjacent stackings = 16 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A25 : A-U O2'/Hh pairing A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G O2'/Ss O2'/C8 inward pairing A34-A35 : G-A O2'/C8 adjacent_5p pairing A38-A47 : U-ARG pairing one_hbond Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward Number of stackings = 17 Number of adjacent stackings = 15 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A23-A27 : U-A Ws/Hh pairing parallel cis one_hbond A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A31-A34 : U-G O2P/Bs pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C2p_exo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A19-A44 : outward A20-A43 : outward A30-A36 : outward Number of stackings = 19 Number of adjacent stackings = 16 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond A21-A25 : G-U O2'/Hh Ss/O2' pairing A21-A26 : G-G Bs/O2P pairing A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A31-A34 : U-G O2P/Hh pairing A32-A34 : G-G O2'/Ww pairing A33-A34 : G-G O2'/Bs O2P/Ss adjacent_5p pairing A34-A35 : G-A O2P/Bh adjacent_5p pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C2p_exo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 16 Number of adjacent stackings = 15 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond A30-A34 : C-G O2'/Hh pairing A31-A34 : U-G O2P/Ww pairing A32-A33 : G-G O2'/Hh adjacent_5p pairing A32-A34 : G-G O2'/Ww O2'/Bs pairing A34-A36 : G-G O2'/Hh O2'/C8 pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C2p_exo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward A30-A36 : outward Number of stackings = 20 Number of adjacent stackings = 17 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A23-A27 : U-A Ww/Hh pairing parallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A26-A40 : G-U Bs/O2' pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G O2'/Ww pairing A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109 A33-A34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo anti A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C2p_exo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A30-A36 : outward Number of stackings = 17 Number of adjacent stackings = 15 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A23-A27 : U-A Ww/Hh pairing parallel cis XXIII A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis one_hbond A28-A37 : G-C Ww/Ww pairing antiparallel cis A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G O2'/Hh pairing A34-A36 : G-G Ww/O2' pairing A34-A37 : G-C Ww/O2P pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_exo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 17 Number of adjacent stackings = 16 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A26-A40 : G-U Bs/O2' pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A32 : C-G O2'/Hh pairing A32-A34 : G-G Bs/O2P Ss/O2P pairing A34-A36 : G-G Ss/O2' pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C2p_exo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C2p_exo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A32-A33 : adjacent_5p outward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 17 Number of adjacent stackings = 16 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A26-A40 : G-U Bs/O2' pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C3p_exo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A41-A42 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A30-A36 : outward Number of stackings = 19 Number of adjacent stackings = 17 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A23-A27 : U-A Ww/Hh pairing parallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A34 : C-G O2'/Ww pairing A30-A35 : C-A O2'/Bh pairing A32-A33 : G-G O2'/Hh adjacent_5p pairing A33-A34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C3p_exo anti A33 : G C2p_endo anti A34 : G C2p_endo anti A35 : A C2p_exo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A32-A33 : adjacent_5p outward pairing A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A34-A36 : outward Number of stackings = 19 Number of adjacent stackings = 17 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A23-A27 : U-A Ws/Hh pairing parallel cis one_hbond A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis A29-A30 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A30-A37 : C-C Ww/O2' Bh/O2' pairing A32-A33 : G-G O2P/Bs adjacent_5p outward pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C2p_exo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C2p_exo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A17-A46 : outward A20-A43 : outward A30-A36 : outward Number of stackings = 20 Number of adjacent stackings = 17 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A33-A34 : G-G O2'/Ss adjacent_5p pairing A34-A36 : G-G Ww/O2' Ss/O2' pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C2p_exo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 17 Number of adjacent stackings = 16 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A34-A36 : G-G O2'/C8 pairing A35-A36 : A-G O2P/Hh adjacent_5p pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo anti A35 : A C2p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 16 Number of adjacent stackings = 15 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A45 : G-C Wh/Wh pairing antiparallel cis one_hbond A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX A34-A35 : G-A O2'/C8 adjacent_5p pairing A38-A47 : U-ARG pairing one_hbond Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C2p_exo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C2p_exo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C2p_exo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A37-A38 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A19-A44 : outward A20-A43 : outward A23-A26 : downward Number of stackings = 21 Number of adjacent stackings = 18 Number of non adjacent stackings = 3 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A30 : G-C Ss/Hw O2'/Bh pairing antiparallel trans one_hbond A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A30 : C-C O2'/Hh adjacent_5p pairing A29-A36 : C-G Ww/Ww pairing antiparallel cis A30-A36 : C-G O2'/Bs pairing A31-A34 : U-G O2P/Hh pairing A32-A34 : G-G O2P/Bs O2P/Ss O2P/Bs pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C2p_exo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C2p_exo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo anti A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C3p_exo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A29-A30 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A41-A42 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A22-A26 : upward Number of stackings = 19 Number of adjacent stackings = 17 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis A31-A34 : U-G Hh/Hh O2P/Ss O2P/C8 pairing parallel trans one_hbond A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond A32-A34 : G-G O2'/Ww O2'/Bs pairing A33-A34 : G-G O2'/Bs O2'/Ss adjacent_5p pairing A33-A35 : G-A Ss/Wh O2'/Bh pairing parallel trans one_hbond A34-A36 : G-G O2'/C8 pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C2p_exo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C3p_exo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_endo anti A36 : G C2p_exo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C2p_exo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A31-A34 : outward Number of stackings = 16 Number of adjacent stackings = 14 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A30 : C-C O2'/Hh adjacent_5p pairing A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond A30-A36 : C-G O2'/Bs pairing A33-A34 : G-G O2P/Bs adjacent_5p pairing A34-A36 : G-G O2'/Ss O2'/C8 pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C2p_exo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C3p_endo anti A28 : G C3p_endo anti A29 : C C3p_endo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo anti A35 : A C2p_exo syn A36 : G C3p_endo anti A37 : C C2p_exo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C2p_exo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A19-A44 : outward A20-A43 : outward Number of stackings = 17 Number of adjacent stackings = 15 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A26-A40 : G-U Bs/O2' pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C2p_exo anti A20 : A C3p_endo anti A21 : G C2p_exo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo anti A35 : A C2p_endo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C3p_endo anti A39 : C C3p_endo anti A40 : U C2p_exo anti A41 : C C3p_endo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C3p_endo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward A45-A46 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward A21-A42 : outward Number of stackings = 15 Number of adjacent stackings = 13 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A26-A40 : G-U Bs/O2' pairing A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A30 : C-C O2'/Hh adjacent_5p pairing A29-A36 : C-G Ww/Ww pairing antiparallel cis A30-A36 : C-G O2'/Bs pairing Residue conformations ------------------------------------------- A16 : G C3p_endo anti A17 : G C3p_endo anti A18 : C C3p_endo anti A19 : C C3p_endo anti A20 : A C3p_endo anti A21 : G C3p_endo anti A22 : A C3p_endo anti A23 : U C2p_endo anti A25 : U C2p_endo anti A26 : G C3p_endo anti A27 : A C2p_exo anti A28 : G C3p_endo anti A29 : C C2p_exo anti A30 : C C2p_endo syn A31 : U C2p_endo anti A32 : G C2p_endo anti A33 : G C2p_endo anti A34 : G C2p_endo syn A35 : A C2p_exo anti A36 : G C3p_endo anti A37 : C C3p_endo anti A38 : U C2p_exo anti A39 : C C3p_endo anti A40 : U C3p_endo anti A41 : C C2p_exo anti A42 : U C3p_endo anti A43 : G C3p_endo anti A44 : G C2p_exo anti A45 : C C3p_endo anti A46 : C C3p_endo anti A47 : ARG Adjacent stackings ---------------------------------------------- A16-A17 : adjacent_5p upward A17-A18 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward A21-A22 : adjacent_5p upward A26-A27 : adjacent_5p upward A27-A28 : adjacent_5p upward A28-A29 : adjacent_5p upward A36-A37 : adjacent_5p upward A38-A39 : adjacent_5p upward A39-A40 : adjacent_5p upward A40-A41 : adjacent_5p upward A41-A42 : adjacent_5p upward A42-A43 : adjacent_5p upward A43-A44 : adjacent_5p upward A44-A45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A20-A43 : outward Number of stackings = 18 Number of adjacent stackings = 17 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX A20-A42 : A-U Ww/Ww pairing antiparallel cis XX A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX A22-A40 : A-U Ww/Ww pairing antiparallel cis XX A25-A42 : U-U Hh/O2' pairing A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX A27-A38 : A-U Ww/Ww pairing antiparallel cis XX A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX A29-A30 : C-C O2'/Hh adjacent_5p pairing A29-A36 : C-G Ww/Ww pairing antiparallel cis A30-A31 : C-U O2P/Ww adjacent_5p pairing A30-A36 : C-G O2'/Bs pairing A34-A35 : G-A O2P/Hh adjacent_5p pairing