Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : G C3p_endo anti A3 : C C4p_exo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C4p_exo anti A9 : A C4p_exo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C4p_exo anti A14 : U C4p_exo anti A15 : C C3p_endo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C3p_endo anti B6 : G C4p_exo anti B7 : A C3p_endo anti B8 : A C3p_endo anti B9 : C C4p_exo anti B10 : C C4p_exo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C2p_exo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A11-A12 : adjacent_5p upward A14-A15 : adjacent_5p upward A15-A16 : adjacent_5p upward A16-A17 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B9-B10 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A4-A19 : outward A5-A18 : outward A7-A16 : outward A7-B7 : upward A9-B13 : outward B3-B18 : outward B5-B16 : outward B6-B15 : outward Number of stackings = 31 Number of adjacent stackings = 23 Number of non adjacent stackings = 8 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C3p_endo anti A9 : A C2p_exo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : C C3p_endo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C3p_endo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C4p_exo anti B10 : C C4p_exo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C4p_exo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A16-A17 : adjacent_5p upward A19-A20 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B9-B10 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A4-A19 : outward A5-A18 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A8-B14 : outward A9-B13 : outward A14-B8 : outward A15-B7 : outward B5-B16 : outward B6-B15 : outward Number of stackings = 31 Number of adjacent stackings = 20 Number of non adjacent stackings = 11 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C4p_exo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C4p_exo anti A7 : G C3p_endo anti A8 : G C3p_endo anti A9 : A C3p_endo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : C C4p_exo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C4p_exo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C3p_endo anti B10 : C C3p_endo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C4p_exo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A16-A17 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward A20-A21 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A5-A18 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A8-B14 : outward A11-B11 : outward A12-B10 : outward A14-B8 : outward B5-B16 : outward B6-B15 : outward Number of stackings = 35 Number of adjacent stackings = 25 Number of non adjacent stackings = 10 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C4p_exo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C4p_exo anti A9 : A C3p_endo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : C C3p_endo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C3p_endo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C3p_endo anti B10 : C C3p_endo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C4p_exo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A14-A15 : adjacent_5p upward A15-A16 : adjacent_5p upward A16-A17 : adjacent_5p upward A19-A20 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B17-B18 : adjacent_5p upward B18-B19 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-A21 : outward A4-A19 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A8-B14 : outward A11-B11 : outward A12-B10 : outward B6-B15 : outward Number of stackings = 32 Number of adjacent stackings = 23 Number of non adjacent stackings = 9 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C3p_endo anti A9 : A C4p_exo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : C C3p_endo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C4p_exo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C3p_endo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C4p_exo anti B10 : C C4p_exo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A16-A17 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B9-B10 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-A21 : outward A4-A19 : outward A5-A18 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A11-B11 : outward A12-B10 : outward B3-B18 : outward B5-B16 : outward B6-B15 : outward Number of stackings = 32 Number of adjacent stackings = 21 Number of non adjacent stackings = 11 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C4p_exo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C4p_exo anti A9 : A C2p_exo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C3p_endo anti A15 : C C4p_exo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C4p_exo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C4p_exo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C3p_endo anti B10 : C C3p_endo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C4p_exo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A6-A7 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A16-A17 : adjacent_5p upward A18-A19 : adjacent_5p upward A19-A20 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B9-B10 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A5-A18 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A8-B14 : outward A11-B11 : outward B6-B15 : outward Number of stackings = 30 Number of adjacent stackings = 23 Number of non adjacent stackings = 7 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : G C3p_endo anti A3 : C C3p_endo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C3p_endo anti A7 : G C3p_endo anti A8 : G C3p_endo anti A9 : A C3p_endo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C4p_exo anti A14 : U C4p_exo anti A15 : C C4p_exo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C4p_exo anti B6 : G C4p_exo anti B7 : A C4p_exo anti B8 : A C3p_endo anti B9 : C C3p_endo anti B10 : C C3p_endo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C2p_exo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A16-A17 : adjacent_5p upward A19-A20 : adjacent_5p upward B1-B2 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B5-B6 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward B18-B19 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A2-A21 : outward A4-A19 : outward A7-A16 : outward A8-B6 : downward A9-B13 : outward A11-B11 : outward B3-B18 : outward Number of stackings = 28 Number of adjacent stackings = 21 Number of non adjacent stackings = 7 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A7-B7 : G-A Bs/O2' pairing A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B7 : A-A O2P/Hh pairing A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX Residue conformations ------------------------------------------- A1 : G C3p_endo anti A2 : G C3p_endo anti A3 : C C4p_exo anti A4 : A C3p_endo anti A5 : A C3p_endo anti A6 : C C4p_exo anti A7 : G C4p_exo anti A8 : G C3p_endo anti A9 : A C3p_endo anti A10 : U C3p_endo anti A11 : G C3p_endo anti A12 : G C3p_endo anti A13 : U C3p_endo anti A14 : U C4p_exo anti A15 : C C4p_exo anti A16 : G C3p_endo anti A17 : U C3p_endo anti A18 : U C3p_endo anti A19 : G C3p_endo anti A20 : C C3p_endo anti A21 : C C3p_endo anti B1 : G C3p_endo anti B2 : C C3p_endo anti B3 : A C3p_endo anti B4 : C C3p_endo anti B5 : C C3p_endo anti B6 : G C3p_endo anti B7 : A C4p_exo anti B8 : A C4p_exo anti B9 : C C3p_endo anti B10 : C C4p_exo anti B11 : A C3p_endo anti B12 : U C3p_endo anti B13 : C C3p_endo anti B14 : C C3p_endo anti B15 : G C3p_endo anti B16 : G C3p_endo anti B17 : U C3p_endo anti B18 : G C3p_endo anti B19 : C C3p_endo anti Adjacent stackings ---------------------------------------------- A1-A2 : adjacent_5p upward A2-A3 : adjacent_5p upward A3-A4 : adjacent_5p upward A4-A5 : adjacent_5p upward A5-A6 : adjacent_5p upward A8-A9 : adjacent_5p upward A9-A10 : adjacent_5p upward A10-A11 : adjacent_5p upward A11-A12 : adjacent_5p upward A12-A13 : adjacent_5p upward A14-A15 : adjacent_5p upward A16-A17 : adjacent_5p upward A19-A20 : adjacent_5p upward B2-B3 : adjacent_5p upward B3-B4 : adjacent_5p upward B5-B6 : adjacent_5p upward B7-B8 : adjacent_5p upward B8-B9 : adjacent_5p upward B10-B11 : adjacent_5p upward B11-B12 : adjacent_5p upward B14-B15 : adjacent_5p upward B15-B16 : adjacent_5p upward B16-B17 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ A5-A18 : outward A7-A16 : outward A7-B7 : upward A8-B6 : downward A9-B13 : outward A12-B10 : outward B5-B16 : outward Number of stackings = 30 Number of adjacent stackings = 23 Number of non adjacent stackings = 7 Base-pairs ------------------------------------------------------ A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX A4-A18 : A-U Ww/Ww pairing antiparallel cis XX A5-A17 : A-U Ww/Ww pairing antiparallel cis XX A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX A9-B12 : A-U Ww/Ww pairing antiparallel cis XX A10-B11 : U-A Ww/Ww pairing antiparallel cis XX A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX A13-B8 : U-A Ww/Ww pairing antiparallel cis XX A14-B7 : U-A Ww/Ww pairing antiparallel cis XX B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX B3-B17 : A-U Ww/Ww pairing antiparallel cis XX B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX