add tokenizer

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer.json

@@ -0,0 +1,180 @@
+{
+  "version": "1.0",
+  "truncation": null,
+  "padding": null,
+  "added_tokens": [
+    {
+      "id": 0,
+      "content": "[PAD]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 1,
+      "content": "[UNK]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 2,
+      "content": "[CLS]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 3,
+      "content": "[SEP]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 4,
+      "content": "[MASK]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    }
+  ],
+  "normalizer": {
+    "type": "BertNormalizer",
+    "clean_text": true,
+    "handle_chinese_chars": true,
+    "strip_accents": null,
+    "lowercase": false
+  },
+  "pre_tokenizer": {
+    "type": "BertPreTokenizer"
+  },
+  "post_processor": {
+    "type": "TemplateProcessing",
+    "single": [
+      {
+        "SpecialToken": {
+          "id": "[CLS]",
+          "type_id": 0
+        }
+      },
+      {
+        "Sequence": {
+          "id": "A",
+          "type_id": 0
+        }
+      },
+      {
+        "SpecialToken": {
+          "id": "[SEP]",
+          "type_id": 0
+        }
+      }
+    ],
+    "pair": [
+      {
+        "SpecialToken": {
+          "id": "[CLS]",
+          "type_id": 0
+        }
+      },
+      {
+        "Sequence": {
+          "id": "A",
+          "type_id": 0
+        }
+      },
+      {
+        "SpecialToken": {
+          "id": "[SEP]",
+          "type_id": 0
+        }
+      },
+      {
+        "Sequence": {
+          "id": "B",
+          "type_id": 1
+        }
+      },
+      {
+        "SpecialToken": {
+          "id": "[SEP]",
+          "type_id": 1
+        }
+      }
+    ],
+    "special_tokens": {
+      "[CLS]": {
+        "id": "[CLS]",
+        "ids": [
+          2
+        ],
+        "tokens": [
+          "[CLS]"
+        ]
+      },
+      "[SEP]": {
+        "id": "[SEP]",
+        "ids": [
+          3
+        ],
+        "tokens": [
+          "[SEP]"
+        ]
+      }
+    }
+  },
+  "decoder": {
+    "type": "WordPiece",
+    "prefix": "##",
+    "cleanup": true
+  },
+  "model": {
+    "type": "WordPiece",
+    "unk_token": "[UNK]",
+    "continuing_subword_prefix": "##",
+    "max_input_chars_per_word": 100,
+    "vocab": {
+      "[PAD]": 0,
+      "[UNK]": 1,
+      "[CLS]": 2,
+      "[SEP]": 3,
+      "[MASK]": 4,
+      "L": 5,
+      "A": 6,
+      "G": 7,
+      "V": 8,
+      "E": 9,
+      "S": 10,
+      "I": 11,
+      "K": 12,
+      "R": 13,
+      "D": 14,
+      "T": 15,
+      "P": 16,
+      "N": 17,
+      "Q": 18,
+      "F": 19,
+      "Y": 20,
+      "M": 21,
+      "H": 22,
+      "C": 23,
+      "W": 24,
+      "X": 25,
+      "U": 26,
+      "B": 27,
+      "Z": 28,
+      "O": 29
+    }
+  }
+}

tokenizer_config.json

@@ -0,0 +1,16 @@
+{
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": false,
+  "full_tokenizer_file": null,
+  "mask_token": "[MASK]",
+  "name_or_path": "Rostlab/prot_bert_bfd",
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "special_tokens_map_file": null,
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

vocab.txt

@@ -0,0 +1,30 @@
+[PAD]
+[UNK]
+[CLS]
+[SEP]
+[MASK]
+L
+A
+G
+V
+E
+S
+I
+K
+R
+D
+T
+P
+N
+Q
+F
+Y
+M
+H
+C
+W
+X
+U
+B
+Z
+O