File size: 3,346 Bytes
b114f96 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 |
Residue conformations -------------------------------------------
A1 : G C3p_endo anti
A2 : G C3p_endo anti
A3 : C C3p_endo anti
A4 : A C3p_endo anti
A5 : A C3p_endo anti
A6 : U C3p_endo anti
A7 : G C2p_endo anti
A8 : A C3p_endo anti
A9 : A C3p_endo anti
A10 : G C3p_endo anti
A11 : C C3p_endo anti
A12 : G C3p_endo anti
A13 : C C3p_endo anti
A14 : G C3p_endo anti
A15 : C C3p_endo anti
A16 : A C3p_endo anti
A17 : C C3p_endo anti
A18 : G C3p_endo anti
A19 : U C3p_endo anti
A20 : U C3p_endo anti
A21 : G C3p_endo anti
A22 : C C3p_endo anti
A23 : C C3p_endo anti
B1 : G C3p_endo anti
B2 : G C3p_endo anti
B3 : C C3p_endo anti
B4 : A C3p_endo anti
B5 : A C3p_endo anti
B6 : U C3p_endo anti
B7 : G C2p_endo anti
B8 : A C3p_endo anti
B9 : A C3p_endo anti
B10 : G C3p_endo anti
B11 : C C3p_endo anti
B12 : G C3p_endo anti
B13 : C C3p_endo anti
B14 : G C3p_endo anti
B15 : C C3p_endo anti
B16 : A C3p_endo anti
B17 : C C3p_endo anti
B18 : G C3p_endo anti
B19 : U C3p_endo anti
B20 : U C3p_endo anti
B21 : G C3p_endo anti
B22 : C C3p_endo anti
B23 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward
A2-A3 : adjacent_5p upward
A4-A5 : adjacent_5p upward
A5-A6 : adjacent_5p upward
A6-A7 : adjacent_5p upward
A10-A11 : adjacent_5p upward
A12-A13 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A18-A19 : adjacent_5p upward
A19-A20 : adjacent_5p upward
A21-A22 : adjacent_5p upward
A22-A23 : adjacent_5p upward
B1-B2 : adjacent_5p upward
B2-B3 : adjacent_5p upward
B4-B5 : adjacent_5p upward
B5-B6 : adjacent_5p upward
B6-B7 : adjacent_5p upward
B10-B11 : adjacent_5p upward
B12-B13 : adjacent_5p upward
B14-B15 : adjacent_5p upward
B15-B16 : adjacent_5p upward
B18-B19 : adjacent_5p upward
B19-B20 : adjacent_5p upward
B21-B22 : adjacent_5p upward
B22-B23 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
A4-A21 : outward
A9-B17 : outward
B4-B21 : outward
Number of stackings = 29
Number of adjacent stackings = 26
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A1-A23 : G-C Ww/Ww pairing antiparallel cis XIX
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX
A3-A21 : C-G Ww/Ww pairing antiparallel cis XIX
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX
A5-A19 : A-U Ww/Ww pairing antiparallel cis XX
A6-A18 : U-G Ws/Ww pairing antiparallel cis XXVIII
A8-A10 : A-G C8/O2P pairing
A8-A11 : A-C Bh/O2P pairing
A8-B9 : A-A O2'/C8 pairing
A9-B8 : A-A C8/O2' pairing
A9-B16 : A-A Wh/Ss pairing antiparallel cis one_hbond 40
A10-B15 : G-C Ww/Ww pairing antiparallel cis 127
A11-B14 : C-G Ww/Ww pairing antiparallel cis 128
A12-B13 : G-C Ww/Ww pairing antiparallel cis 128
A13-B12 : C-G Ww/Ww pairing antiparallel cis 128
A14-B11 : G-C Ww/Ww pairing antiparallel cis XIX
A15-B10 : C-G Ww/Ww pairing antiparallel cis XIX
A16-B9 : A-A Ss/Wh pairing antiparallel cis one_hbond 40
B1-B23 : G-C Ww/Ww pairing antiparallel cis XIX
B2-B22 : G-C Ww/Ww pairing antiparallel cis XIX
B3-B21 : C-G Ww/Ww pairing antiparallel cis XIX
B4-B20 : A-U Ww/Ww pairing antiparallel cis XX
B5-B19 : A-U Ww/Ww pairing antiparallel cis XX
B6-B18 : U-G Ws/Ww pairing antiparallel cis XXVIII
B8-B10 : A-G C8/O2P pairing
B8-B11 : A-C Bh/O2P pairing
|