|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C2p_exo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 4 |
|
Number of adjacent stackings = 4 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 4 |
|
Number of adjacent stackings = 4 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 3 |
|
Number of adjacent stackings = 3 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C2p_exo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 4 |
|
Number of adjacent stackings = 4 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C2p_exo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 5 |
|
Number of adjacent stackings = 5 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C2p_exo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 3 |
|
Number of adjacent stackings = 3 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 4 |
|
Number of adjacent stackings = 4 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C2p_exo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 5 |
|
Number of adjacent stackings = 5 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 4 |
|
Number of adjacent stackings = 4 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
Residue conformations |
|
A1 : GPN |
|
A2 : APN |
|
A3 : APN |
|
A4 : CPN |
|
A5 : TPN |
|
A6 : CPN |
|
B7 : G C2p_exo anti |
|
B8 : A C2p_exo anti |
|
B9 : G C3p_endo anti |
|
B10 : U C3p_endo anti |
|
B11 : U C3p_endo anti |
|
B12 : C C3p_endo anti |
|
Adjacent stackings |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 3 |
|
Number of adjacent stackings = 3 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B12 : GPN-C pairing parallel one_hbond |
|
|
