|
Residue conformations |
|
B201 : G C2p_exo anti |
|
B202 : G C2p_exo anti |
|
B203 : A C3p_endo anti |
|
B204 : C O4p_exo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C O4p_exo anti |
|
B209 : G O4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C3p_endo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C3p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B209-B213 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B209-B212 : G-G Bs/O2P pairing |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C4p_exo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C3p_endo anti |
|
B209 : G C2p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C1p_endo anti |
|
B214 : C C2p_exo anti |
|
B215 : U O4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B209-B213 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C O4p_exo anti |
|
B205 : U C2p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C1p_endo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
B219-B220 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B206-B216 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C4p_exo anti |
|
B204 : C C4p_exo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C3p_exo anti |
|
B212 : G C1p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C2p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward pairing |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B208 : G-C O2'/Hh adjacent_5p upward pairing |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C O4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C3p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G O4p_exo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C3p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
Residue conformations |
|
B201 : G C4p_exo syn |
|
B202 : G C2p_exo anti |
|
B203 : A C4p_exo anti |
|
B204 : C C4p_exo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C3p_endo anti |
|
B208 : C O4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G O4p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C1p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C O4p_exo anti |
|
B209 : G C1p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C3p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C3p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis |
|
B209-B212 : G-G Bs/O2P pairing |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U O4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C3p_endo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C3p_exo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C3p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C4p_exo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C C2p_exo anti |
|
B209 : G O4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C1p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis |
|
B209-B212 : G-G Bs/O2P pairing |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C O4p_exo anti |
|
B209 : G C1p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C2p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B209-B212 : G-G Wh/Sw pairing parallel cis one_hbond 114 |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C O4p_exo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C1p_endo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C2p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C4p_exo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C4p_exo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C C1p_endo anti |
|
B209 : G C4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C3p_exo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C4p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C4p_endo anti |
|
B220 : C C4p_exo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B209-B212 : G-G Hw/Sw pairing antiparallel trans one_hbond 112 |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C2p_exo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C1p_exo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C2p_exo anti |
|
B220 : C C4p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U O4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C3p_endo anti |
|
B208 : C C1p_endo anti |
|
B209 : G O4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C4p_endo anti |
|
B220 : C C4p_exo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B205-B206 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B209-B212 : G-G Bs/O2P pairing |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C4p_exo anti |
|
B208 : C O4p_exo anti |
|
B209 : G O4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C3p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C3p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C4p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B201-B202 : adjacent_5p upward |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C3p_endo anti |
|
B209 : G C3p_endo anti |
|
B210 : G O4p_exo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C4p_exo anti |
|
B213 : G C1p_endo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B203-B204 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B206-B216 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B219 : G-C Hw/Wh pairing antiparallel cis one_hbond 122 |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C3p_endo anti |
|
B208 : C O4p_exo anti |
|
B209 : G C3p_endo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U C2p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C4p_exo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C3p_endo anti |
|
B208 : C C3p_endo anti |
|
B209 : G C4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G O4p_exo anti |
|
B214 : C C2p_exo anti |
|
B215 : U O4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B203-B204 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 7 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C3p_endo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C4p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C3p_exo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C3p_endo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C3p_endo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C4p_exo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C4p_exo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G C4p_endo anti |
|
B211 : A C2p_endo anti |
|
B212 : G C3p_exo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C4p_exo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B202-B203 : adjacent_5p upward |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
B201 : G C3p_endo anti |
|
B202 : G C3p_endo anti |
|
B203 : A C3p_endo anti |
|
B204 : C C3p_endo anti |
|
B205 : U C3p_endo anti |
|
B206 : A C4p_exo anti |
|
B207 : G C4p_exo anti |
|
B208 : C C4p_exo anti |
|
B209 : G C2p_exo anti |
|
B210 : G O4p_exo anti |
|
B211 : A C2p_endo anti |
|
B212 : G O4p_endo anti |
|
B213 : G C2p_exo anti |
|
B214 : C C3p_endo anti |
|
B215 : U C4p_exo anti |
|
B216 : A C4p_exo anti |
|
B217 : G C4p_exo anti |
|
B218 : U C3p_endo anti |
|
B219 : C C3p_endo anti |
|
B220 : C C3p_endo anti |
|
A1 : MET |
|
A2 : GLN |
|
A3 : LYS |
|
A4 : GLY |
|
A5 : ASN |
|
A6 : PHE |
|
A7 : ARG |
|
A8 : ASN |
|
A9 : GLN |
|
A10 : ARG |
|
A11 : LYS |
|
A12 : THR |
|
A13 : VAL |
|
A14 : LYS |
|
A15 : CYS |
|
A16 : PHE |
|
A17 : ASN |
|
A18 : CYS |
|
A19 : GLY |
|
A20 : LYS |
|
A21 : GLU |
|
A22 : GLY |
|
A23 : HIS |
|
A24 : ILE |
|
A25 : ALA |
|
A26 : LYS |
|
A27 : ASN |
|
A28 : CYS |
|
A29 : ARG |
|
A30 : ALA |
|
A31 : PRO |
|
A32 : ARG |
|
A33 : LYS |
|
A34 : LYS |
|
A35 : GLY |
|
A36 : CYS |
|
A37 : TRP |
|
A38 : LYS |
|
A39 : CYS |
|
A40 : GLY |
|
A41 : LYS |
|
A42 : GLU |
|
A43 : GLY |
|
A44 : HIS |
|
A45 : GLN |
|
A46 : MET |
|
A47 : LYS |
|
A48 : ASP |
|
A49 : CYS |
|
A50 : THR |
|
A51 : GLU |
|
A52 : ARG |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : ASN |
|
A56 : ZN |
|
A57 : ZN |
|
Adjacent stackings |
|
B203-B204 : adjacent_5p upward |
|
B204-B205 : adjacent_5p upward |
|
B206-B207 : adjacent_5p upward |
|
B207-B208 : adjacent_5p upward pairing |
|
B208-B209 : adjacent_5p upward |
|
B213-B214 : adjacent_5p upward |
|
B214-B215 : adjacent_5p upward |
|
B216-B217 : adjacent_5p upward |
|
B217-B218 : adjacent_5p upward |
|
B218-B219 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A32-B211 : ARG-A pairing one_hbond |
|
A46-B210 : MET-G pairing one_hbond |
|
B201-B220 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B202-B219 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B203-B218 : A-U Ww/Ww pairing antiparallel cis XX |
|
B204-B217 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B205-B216 : U-A Ww/Ww pairing antiparallel cis XX |
|
B206-B215 : A-U Ww/Ww pairing antiparallel cis XX |
|
B207-B208 : G-C O2'/Hh adjacent_5p upward pairing |
|
B207-B214 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B208-B213 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
|
