|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C2p_exo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C2p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Ww/O2P pairing |
|
A9-A13 : G-A Bs/Hh Bs/O2P pairing antiparallel trans one_hbond |
|
A9-B6 : G-ARG pairing one_hbond |
|
A15-B3 : G-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Ww/O2P pairing |
|
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond |
|
A9-B6 : G-ARG pairing one_hbond |
|
A15-B3 : G-LYS pairing |
|
Residue conformations |
|
A4 : G C3p_endo anti |
|
A5 : C C2p_exo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C3p_exo anti |
|
A11 : C C2p_endo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Bs/O2P pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A15-B3 : G-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C2p_exo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A13 : G-A Bs/Hh pairing antiparallel trans one_hbond |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C2p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A Ww/O2P pairing |
|
A9-A13 : G-A Ws/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C2p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Ws/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C2p_exo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C2p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Ww/O2P pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A Ww/O2P pairing |
|
A9-A13 : G-A Ws/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C2p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Ww/O2P pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Bs/O2P pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C2p_exo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/Hh pairing antiparallel trans one_hbond |
|
A9-B6 : G-ARG pairing one_hbond |
|
A14-B3 : A-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A C1p_exo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A Ww/O2P pairing |
|
A9-A13 : G-A Bs/Hh Ws/O2P pairing antiparallel trans one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh Ww/O2P pairing |
|
A9-A13 : G-A Ws/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
A15-B3 : G-LYS pairing one_hbond |
|
Residue conformations |
|
A4 : G C4p_exo anti |
|
A5 : C C2p_exo anti |
|
A6 : G C2p_exo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C2p_exo anti |
|
A9 : G C3p_endo anti |
|
A10 : A O4p_endo anti |
|
A11 : C C1p_exo anti |
|
A12 : A C3p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : A C2p_exo anti |
|
A15 : G C2p_exo anti |
|
A16 : C C2p_exo anti |
|
A17 : G C3p_endo anti |
|
A18 : C C3p_endo anti |
|
B1 : ASN |
|
B2 : ALA |
|
B3 : LYS |
|
B4 : THR |
|
B5 : ARG |
|
B6 : ARG |
|
B7 : HIS |
|
B8 : GLU |
|
B9 : ARG |
|
B10 : ARG |
|
B11 : ARG |
|
B12 : LYS |
|
B13 : LEU |
|
B14 : ALA |
|
B15 : ILE |
|
B16 : GLU |
|
B17 : ARG |
|
B18 : ASP |
|
B19 : THR |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A6-A17 : outward |
|
A10-A12 : upward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A17 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A6-A16 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A14 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A12 : G-A O2'/Hh pairing |
|
A9-A13 : G-A Bs/O2P pairing |
|
A9-B6 : G-ARG pairing one_hbond |
|
|
