|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C4p_exo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C3p_endo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Ww O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 8 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond |
|
A6-A7 : G-A O2P/Bh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C2p_exo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 6 |
|
Number of adjacent stackings = 6 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Ww O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 8 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Ww O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C2p_exo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C3p_endo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A8 : U-A O2'/Bh pairing |
|
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C3p_endo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A7 : U-A O2'/Hh pairing |
|
A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 7 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A7 : U-A O2'/Hh pairing |
|
A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46 |
|
A6-A7 : G-A O2P/Hh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C2p_endo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 7 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A7 : U-A O2'/Hh pairing |
|
A5-A8 : U-A Bs/Wh O2'/Ww pairing antiparallel cis one_hbond 46 |
|
A6-A7 : G-A O2P/Hh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C4p_exo anti |
|
A5 : U C3p_endo anti |
|
A6 : G O4p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C2p_exo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward pairing |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : U-G O2P/Ww adjacent_5p inward pairing |
|
A5-A7 : U-A O2'/Hh pairing |
|
A5-A8 : U-A Ss/Wh O2'/Ww pairing antiparallel cis one_hbond |
|
A6-A7 : G-A O2P/Bh O2P/Hh adjacent_5p pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C3p_exo anti |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C O4p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward pairing |
|
A7-A8 : adjacent_5p upward pairing |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward pairing |
|
A10-A11 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 8 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
|
A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A6 : U-G O2'/C8 adjacent_5p inward pairing |
|
A5-A8 : U-A O2'/Ww O2'/Bh pairing |
|
A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p upward pairing |
|
A7-A9 : A-C Ss/O2P pairing |
|
A9-A10 : C-A O2'/C8 adjacent_5p upward pairing |
|
Residue conformations |
|
A1 : G O4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : G C3p_endo anti |
|
A5 : U C3p_endo anti |
|
A6 : G C3p_endo syn |
|
A7 : A C3p_exo syn |
|
A8 : A C2p_endo syn |
|
A9 : C C4p_exo anti |
|
A10 : A C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p inward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 7 |
|
Number of adjacent stackings = 7 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A10 : U-A Ww/Ww pairing antiparallel cis XX |
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A4-A9 : G-C Ww/Ww pairing antiparallel cis XIX |
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A5-A8 : U-A Ss/Wh O2'/Ww O2'/Bh pairing antiparallel cis one_hbond |
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A6-A7 : G-A O2P/Bh adjacent_5p pairing |
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A7-A8 : A-A O2'/Hh O2'/C8 adjacent_5p pairing |
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A9-A10 : C-A O2'/C8 adjacent_5p pairing |
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