|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : A C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : A C3p_endo anti |
|
A11 : A C3p_endo anti |
|
A12 : C C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : U C3p_endo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : C C3p_endo anti |
|
A19 : NCO |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A16 : outward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A1-A18 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A3-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A15 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A14 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A6-A13 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A7-A12 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-A10 : G-A Ss/O2P pairing |
|
A8-A11 : G-A Ss/Hh O2'/Bh Bs/O2P pairing antiparallel trans XI |
|
|
