|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B25-B38 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C3p_exo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis 130 |
|
B25-B38 : G-C Wh/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C4p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C2p_exo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B22-B48 : outward |
|
B25-B39 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
B20-B49 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Wh/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G Ss/Ws O2'/Bs pairing antiparallel cis one_hbond 84 |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C4p_exo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B48-B49 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
B41-B42 : U-G O2P/Bs O2P/Ss adjacent_5p pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis |
|
B25-B38 : G-C Ww/Ws pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Wh pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C4p_exo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B48-B49 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B22-B48 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C4p_exo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C4p_exo anti |
|
B29 : U C4p_exo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C1p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B24-B46 : A-C Ss/Wh pairing antiparallel cis one_hbond 74 |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B28-B35 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B30-B33 : U-C O2P/Bh adjacent_5p pairing |
|
Residue conformations |
|
B19 : G C2p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B48-B49 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B20-B49 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis |
|
B25-B38 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G Ss/Ws O2'/Bs pairing antiparallel cis one_hbond 84 |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C4p_exo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B30-B33 : U-C O2P/Bh adjacent_5p pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B22-B47 : A-U Wh/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis |
|
B28-B35 : C-G Ws/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C3p_exo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G O4p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C2p_exo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C4p_exo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C2p_exo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B46-B47 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B25-B39 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
B20-B49 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ws/Ws pairing antiparallel cis one_hbond |
|
B25-B38 : G-C Ws/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis 130 |
|
B28-B35 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B30-B33 : U-C O2P/Bh adjacent_5p pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C4p_exo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B41-B42 : adjacent_5p outward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B25-B38 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C1p_exo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B25-B38 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ws/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C4p_exo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B46-B47 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B22-B48 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Ws/Ws pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B29-B34 : U-G Bs/Ww pairing parallel trans one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C4p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B20-B49 : G-C Ww/Ws pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis 130 |
|
B25-B38 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C1p_endo syn |
|
B43 : C C1p_exo syn |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B41-B42 : adjacent_5p outward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo syn |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B41-B42 : adjacent_5p outward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G Ws/Ws pairing antiparallel cis one_hbond |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C4p_exo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C4p_exo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C1p_exo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B41-B42 : adjacent_5p outward pairing |
|
B44-B45 : adjacent_5p upward |
|
B48-B49 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B20-B49 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis one_hbond |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis |
|
B30-B33 : U-C O2P/Bh adjacent_5p pairing |
|
B41-B42 : U-G O2P/Ss adjacent_5p outward pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C4p_exo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B29-B35 : U-G Hw/Sw pairing parallel trans one_hbond 89 |
|
B30-B33 : U-C O2P/Bh adjacent_5p pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
B25-B39 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ws/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G Bs/Bs O2'/Bs pairing antiparallel cis one_hbond |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C4p_endo syn |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B24-B46 : A-C Ss/Wh pairing antiparallel cis one_hbond 74 |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ws/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G Bs/Bs O2'/Bs pairing antiparallel cis one_hbond |
|
Residue conformations |
|
B19 : G C4p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B48-B49 : adjacent_5p upward |
|
B49-B50 : adjacent_5p inward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B20 : G-G O2'/C8 adjacent_5p pairing |
|
B20-B49 : G-C Ws/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Wh/Wh pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Wh pairing antiparallel cis one_hbond |
|
B40-B42 : U-G Ss/Ws O2'/Bs pairing antiparallel cis one_hbond 84 |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C4p_exo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B24-B46 : A-C Ss/Wh pairing antiparallel cis one_hbond 74 |
|
B26-B37 : U-A Wh/Wh pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C4p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C4p_exo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B41-B42 : adjacent_5p outward |
|
B44-B45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A O4p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C3p_endo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C3p_endo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B21-B22 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B25-B26 : adjacent_5p upward pairing |
|
B26-B27 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B50 : G-C Ww/Ww pairing antiparallel cis |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B25-B26 : G-U O2'/Hh adjacent_5p upward pairing |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B27-B36 : C-G Ww/Ww pairing antiparallel cis |
|
B28-B35 : C-G Ws/Ws pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C4p_exo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C2p_exo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C1p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B20-B49 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis 130 |
|
B25-B38 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Wh pairing antiparallel cis one_hbond |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C4p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C4p_exo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C4p_endo syn |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C2p_endo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B33-B34 : adjacent_5p inward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B38-B39 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B46-B47 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B19-B20 : G-G O2'/C8 adjacent_5p pairing |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ws/Ws pairing antiparallel cis one_hbond |
|
B25-B38 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
B30-B33 : U-C O2'/Ww O2'/Bh adjacent_5p pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
Residue conformations |
|
B19 : G C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G O4p_endo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C4p_exo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B37-B38 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B49-B50 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B24-B46 : A-C Ss/Wh pairing antiparallel cis one_hbond 74 |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis |
|
B40-B42 : U-G Bs/Ws pairing antiparallel cis one_hbond |
|
Residue conformations |
|
B19 : G C4p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C3p_endo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C3p_endo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C3p_endo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C3p_endo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C2p_exo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B28-B29 : adjacent_5p upward |
|
B34-B35 : adjacent_5p outward |
|
B35-B36 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B25-B38 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B30-B34 : U-G O2'/Hh pairing |
|
Residue conformations |
|
B19 : G C4p_exo anti |
|
B20 : G C3p_endo anti |
|
B21 : C C4p_exo anti |
|
B22 : A C3p_endo anti |
|
B23 : G C3p_endo anti |
|
B24 : A C2p_exo anti |
|
B25 : G C4p_exo anti |
|
B26 : U C3p_endo anti |
|
B27 : C C4p_exo anti |
|
B28 : C C3p_endo anti |
|
B29 : U C3p_endo anti |
|
B30 : U C3p_exo anti |
|
B33 : C C3p_exo anti |
|
B34 : G C4p_exo syn |
|
B35 : G C3p_endo anti |
|
B36 : G C4p_exo anti |
|
B37 : A C4p_exo anti |
|
B38 : C C3p_endo anti |
|
B39 : A C2p_exo anti |
|
B40 : U C3p_endo anti |
|
B41 : U C3p_exo anti |
|
B42 : G C3p_endo anti |
|
B43 : C C2p_endo anti |
|
B44 : A C3p_endo anti |
|
B45 : C C3p_endo anti |
|
B46 : C C3p_endo anti |
|
B47 : U C3p_endo anti |
|
B48 : G C3p_endo anti |
|
B49 : C C3p_endo anti |
|
B50 : C C3p_endo anti |
|
A1 : ALA |
|
A2 : VAL |
|
A3 : PRO |
|
A4 : GLU |
|
A5 : THR |
|
A6 : ARG |
|
A7 : PRO |
|
A8 : ASN |
|
A9 : HIS |
|
A10 : THR |
|
A11 : ILE |
|
A12 : TYR |
|
A13 : ILE |
|
A14 : ASN |
|
A15 : ASN |
|
A16 : LEU |
|
A17 : ASN |
|
A18 : GLU |
|
A19 : LYS |
|
A20 : ILE |
|
A21 : LYS |
|
A22 : LYS |
|
A23 : ASP |
|
A24 : GLU |
|
A25 : LEU |
|
A26 : LYS |
|
A27 : LYS |
|
A28 : SER |
|
A29 : LEU |
|
A30 : HIS |
|
A31 : ALA |
|
A32 : ILE |
|
A33 : PHE |
|
A34 : SER |
|
A35 : ARG |
|
A36 : PHE |
|
A37 : GLY |
|
A38 : GLN |
|
A39 : ILE |
|
A40 : LEU |
|
A41 : ASP |
|
A42 : ILE |
|
A43 : LEU |
|
A44 : VAL |
|
A45 : SER |
|
A46 : ARG |
|
A47 : SER |
|
A48 : LEU |
|
A49 : LYS |
|
A50 : MET |
|
A51 : ARG |
|
A52 : GLY |
|
A53 : GLN |
|
A54 : ALA |
|
A55 : PHE |
|
A56 : VAL |
|
A57 : ILE |
|
A58 : PHE |
|
A59 : LYS |
|
A60 : GLU |
|
A61 : VAL |
|
A62 : SER |
|
A63 : SER |
|
A64 : ALA |
|
A65 : THR |
|
A66 : ASN |
|
A67 : ALA |
|
A68 : LEU |
|
A69 : ARG |
|
A70 : SER |
|
A71 : MET |
|
A72 : GLN |
|
A73 : GLY |
|
A74 : PHE |
|
A75 : PRO |
|
A76 : PHE |
|
A77 : TYR |
|
A78 : ASP |
|
A79 : LYS |
|
A80 : PRO |
|
A81 : MET |
|
A82 : ARG |
|
A83 : ILE |
|
A84 : GLN |
|
A85 : TYR |
|
A86 : ALA |
|
A87 : LYS |
|
A88 : THR |
|
A89 : ASP |
|
A90 : SER |
|
A91 : ASP |
|
A92 : ILE |
|
A93 : ILE |
|
A94 : ALA |
|
A95 : LYS |
|
A96 : MET |
|
A97 : LYS |
|
A98 : GLY |
|
A99 : THR |
|
A100 : PHE |
|
A101 : VAL |
|
Adjacent stackings |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward |
|
B23-B24 : adjacent_5p upward |
|
B26-B27 : adjacent_5p upward |
|
B35-B36 : adjacent_5p upward |
|
B36-B37 : adjacent_5p upward |
|
B39-B40 : adjacent_5p upward |
|
B44-B45 : adjacent_5p upward |
|
B47-B48 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 9 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
B21-B48 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B47 : A-U Ww/Ww pairing antiparallel cis XX |
|
B23-B46 : G-C Ww/Ww pairing antiparallel cis |
|
B25-B38 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
B26-B37 : U-A Ww/Ww pairing antiparallel cis XX |
|
B28-B35 : C-G Ww/Ww pairing antiparallel cis |
|
B30-B34 : U-G O2'/Hh pairing |
|
B40-B42 : U-G O2'/Bs pairing |
|
|
