|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A23 : G-C Wh/Ww pairing antiparallel cis one_hbond |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C O2'/Bh pairing |
|
A5-A17 : U-A O2'/Bh pairing |
|
A7-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A10-A15 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 |
|
A12-A13 : U-C O2P/Ww adjacent_5p pairing |
|
A17-A18 : A-A Ss/Hw adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C O2'/Bh pairing |
|
A5-A17 : U-A O2'/Bh pairing |
|
A7-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A17 : U-A Wh/Bs pairing antiparallel trans one_hbond |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A10-A15 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 |
|
A12-A13 : U-C O2P/Bh adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C O2'/Bh pairing |
|
A5-A17 : U-A O2'/Bh pairing |
|
A7-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A10-A15 : C-G Ww/Ww pairing antiparallel cis one_hbond 130 |
|
A12-A13 : U-C O2P/Bh adjacent_5p pairing |
|
A17-A18 : A-A Ss/Hw adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C Ws/Hw pairing parallel cis one_hbond 99 |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A10-A15 : C-G Ww/Ww pairing antiparallel cis one_hbond 130 |
|
A12-A13 : U-C O2P/Bh adjacent_5p pairing |
|
A17-A18 : A-A Ss/Hw adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C Ws/Hw pairing parallel cis one_hbond 99 |
|
A7-A19 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A10-A15 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 |
|
A12-A13 : U-C O2P/Ww adjacent_5p pairing |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : U C3p_exo anti |
|
A6 : A C3p_endo anti |
|
A7 : C C3p_endo anti |
|
A8 : U C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : C C3p_endo anti |
|
A11 : U C3p_endo anti |
|
A12 : U C3p_exo anti |
|
A13 : C C3p_exo anti |
|
A14 : G C3p_endo syn |
|
A15 : G C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : A C3p_exo anti |
|
A18 : A C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : U C3p_endo anti |
|
A21 : C C3p_endo anti |
|
A22 : C C3p_endo anti |
|
A23 : C C3p_endo anti |
|
Adjacent stackings |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A14-A15 : adjacent_5p outward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-A23 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A2-A22 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-A20 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A7 : U-C Ws/Hw pairing parallel cis one_hbond 99 |
|
A8-A18 : U-A Ww/Ww pairing antiparallel cis XX |
|
A9-A16 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A12-A13 : U-C O2P/Bh adjacent_5p pairing |
|
|
