Residue conformations -------------------------------------------
A1 : G C3p_endo anti
A2 : G C3p_endo anti
A3 : A C3p_endo anti
A4 : C C3p_endo anti
A5 : A C2p_exo anti
A6 : G C3p_endo anti
A7 : A C3p_endo anti
A8 : U C3p_endo anti
A9 : G C3p_endo anti
A10 : G C3p_endo anti
A11 : G C3p_endo anti
A12 : A C3p_endo anti
A13 : G C3p_endo anti
B14 : G C3p_endo anti
B15 : C C3p_endo anti
B16 : T C3p_endo anti
B17 : C C3p_endo anti
B18 : C C3p_endo anti
B19 : C C4p_exo anti
B20 : A O4p_endo anti
B21 : G C2p_endo anti
B22 : G C3p_endo anti
B23 : C C4p_exo anti
B24 : T C2p_endo anti
B25 : A C3p_exo anti
B26 : G C2p_endo anti
B27 : C C4p_exo anti
B28 : T C2p_endo anti
B29 : A C3p_exo syn
B30 : C C1p_exo anti
B31 : A C1p_exo anti
B32 : A C1p_exo syn
B33 : C C2p_endo anti
B34 : G C2p_endo anti
B35 : A C2p_endo anti
B36 : C C2p_exo anti
B37 : T C3p_endo anti
B38 : G C3p_endo anti
B39 : T C3p_endo anti
B40 : C C3p_endo anti
B41 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A1-A2 : adjacent_5p upward 
A2-A3 : adjacent_5p upward 
A3-A4 : adjacent_5p upward 
A5-A6 : adjacent_5p upward 
A6-A7 : adjacent_5p upward 
A7-A8 : adjacent_5p upward 
A8-A9 : adjacent_5p upward 
A9-A10 : adjacent_5p upward 
A10-A11 : adjacent_5p upward 
A11-A12 : adjacent_5p upward 
A12-A13 : adjacent_5p upward 
B14-B15 : adjacent_5p upward 
B16-B17 : adjacent_5p upward 
B18-B19 : adjacent_5p upward 
B19-B20 : adjacent_5p upward 
B20-B21 : adjacent_5p upward 
B22-B23 : adjacent_5p upward 
B24-B25 : adjacent_5p upward 
B25-B26 : adjacent_5p upward 
B26-B27 : adjacent_5p upward 
B27-B28 : adjacent_5p upward 
B31-B32 : adjacent_5p inward 
B33-B34 : adjacent_5p upward 
B34-B35 : adjacent_5p upward 
B38-B39 : adjacent_5p upward 
B39-B40 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A5-B38 : outward 
B29-B31 : upward 
Number of stackings = 28
Number of adjacent stackings = 26
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A1-B41 : G-C Ww/Ww pairing antiparallel cis XIX 
A2-B40 : G-C Ww/Ww pairing antiparallel cis XIX 
A3-B39 : A-T Ww/Ww pairing antiparallel cis 
A4-B38 : C-G Ww/Ww pairing antiparallel cis XIX 
A5-B37 : A-T Ww/Ws pairing antiparallel cis 
A6-B36 : G-C Ww/Ww pairing antiparallel cis XIX 
B28-B29 : T-A O2P/Bh adjacent_5p pairing 
B28-B35 : T-A Ww/Ww pairing antiparallel cis 
B29-B33 : A-C Ss/Hw pairing antiparallel trans one_hbond 72