Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C1p_exo anti N19 : C C3p_endo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C2p_exo anti N25 : U C3p_endo anti N26 : G C4p_exo anti N27 : A C4p_exo anti N28 : G C3p_endo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U C3p_endo anti N32 : G C2p_exo anti N33 : G C2p_exo anti N34 : G C2p_exo syn N35 : A C2p_exo anti N36 : G C3p_endo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C3p_endo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p outward pairing N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N18-N45 : inward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N18-N19 : G-C O2'/Hh adjacent_5p outward pairing N18-N43 : G-G Ws/Wh pairing parallel trans one_hbond N18-N44 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N34 : C-G Ss/Ws pairing antiparallel cis one_hbond 127 N33-N34 : G-G O2P/Bs adjacent_5p pairing N34-N35 : G-A O2'/Hh adjacent_5p pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C2p_exo anti N19 : C C3p_endo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C2p_exo anti N25 : U C1p_exo anti N26 : G C4p_exo anti N27 : A C3p_endo anti N28 : G C3p_endo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U C4p_endo anti N32 : G C3p_endo anti N33 : G C2p_endo anti N34 : G C2p_exo anti N35 : A C2p_endo anti N36 : G C3p_endo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C3p_endo anti N42 : U C3p_endo anti N43 : G C4p_exo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward pairing N38-N39 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N44 : G-C Bh/Wh pairing antiparallel cis one_hbond N17-N45 : G-C Ww/Ww pairing antiparallel cis N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N30 : C-C O2P/Bh adjacent_5p upward pairing N29-N36 : C-G Wh/Wh pairing antiparallel cis one_hbond N33-N34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C3p_endo anti N25 : U C2p_endo syn N26 : G C3p_endo anti N27 : A C4p_exo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U C2p_exo anti N32 : G C3p_exo anti N33 : G C2p_exo anti N34 : G C3p_endo syn N35 : A C1p_endo anti N36 : G C2p_exo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C4p_exo anti N45 : C C2p_exo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis N29-N36 : C-G Ww/Ww pairing antiparallel cis N30-N34 : C-G Ss/Ws O2'/Bs pairing antiparallel cis one_hbond 127 N34-N35 : G-A O2'/Hh adjacent_5p pairing N35-N36 : A-G Ww/O2' adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C2p_exo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C2p_exo anti N22 : A C3p_endo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C1p_exo anti N26 : G C4p_exo anti N27 : A C4p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C3p_exo anti N32 : G O4p_endo anti N33 : G C2p_exo anti N34 : G C3p_endo syn N35 : A C3p_endo anti N36 : G C2p_exo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C2p_exo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 14 Number of adjacent stackings = 13 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N33-N34 : G-G O2'/Ss adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C2p_exo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C4p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C2p_exo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C3p_endo anti N31 : U C3p_endo anti N32 : G C3p_endo anti N33 : G C3p_exo anti N34 : G C2p_exo syn N35 : A C3p_exo anti N36 : G C3p_endo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C2p_exo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N18-N45 : outward N20-N43 : outward Number of stackings = 16 Number of adjacent stackings = 14 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N25 : A-U Ss/Hh pairing antiparallel trans one_hbond N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis N32-N33 : G-G O2'/Hh adjacent_5p pairing N34-N35 : G-A O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo syn N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C2p_exo anti N25 : U C3p_endo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C2p_endo anti N32 : G C3p_exo anti N33 : G C2p_endo anti N34 : G C2p_exo anti N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C2p_exo anti N43 : G C3p_endo anti N44 : C C1p_endo anti N45 : C O4p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p downward N18-N19 : adjacent_5p outward pairing N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N34-N36 : upward Number of stackings = 16 Number of adjacent stackings = 15 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N18-N19 : G-C O2'/Hh adjacent_5p outward pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' pairing N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis one_hbond N21-N41 : G-C Ww/Ww pairing antiparallel cis N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond N26-N39 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis N30-N34 : C-G Bs/Ww O2'/Bs pairing antiparallel cis one_hbond 127 N34-N35 : G-A O2'/Hh adjacent_5p pairing N35-N36 : A-G Ww/O2' adjacent_5p pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C2p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C1p_exo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C2p_exo anti N32 : G C2p_exo anti N33 : G C2p_endo anti N34 : G C1p_endo anti N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 15 Number of adjacent stackings = 15 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N31 : C-U O2'/Hh adjacent_5p pairing N32-N33 : G-G O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C2p_exo anti N19 : C C3p_endo anti N20 : A C3p_endo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C2p_endo syn N26 : G C3p_endo anti N27 : A C3p_endo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U O4p_endo anti N32 : G C3p_exo anti N33 : G C3p_endo anti N34 : G C2p_exo anti N35 : A C2p_endo anti N36 : G C2p_exo anti N37 : C C4p_exo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N38-N39 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis 130 N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis N29-N36 : C-G Ww/Ww pairing antiparallel cis N30-N34 : C-G O2'/Bs pairing N31-N36 : U-G Hw/Sw pairing parallel trans one_hbond 89 N32-N33 : G-G O2P/Ss adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C3p_endo syn N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C2p_endo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C1p_exo anti N32 : G C4p_exo anti N33 : G C3p_exo anti N34 : G C1p_endo anti N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C O4p_endo anti N42 : U C4p_exo anti N43 : G C2p_exo anti N44 : C C2p_exo anti N45 : C C4p_exo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p downward N18-N19 : adjacent_5p outward pairing N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N34-N36 : upward Number of stackings = 17 Number of adjacent stackings = 16 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N18-N19 : G-C O2'/Hh adjacent_5p outward pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' Ss/O2' pairing N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N33-N34 : G-G O2P/Ss adjacent_5p pairing N34-N35 : G-A O2'/Hh adjacent_5p pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C2p_exo anti N19 : C C3p_endo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C1p_exo anti N26 : G C4p_exo anti N27 : A C2p_exo anti N28 : G C3p_endo anti N29 : C C2p_exo anti N30 : C C2p_exo anti N31 : U C3p_exo anti N32 : G C2p_exo anti N33 : G C3p_exo anti N34 : G C1p_endo syn N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 14 Number of adjacent stackings = 13 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 N31-N32 : U-G O2'/Hh adjacent_5p pairing N34-N35 : G-A O2'/C8 adjacent_5p pairing N34-N37 : G-C Hh/O2P pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C4p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C1p_exo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C2p_exo anti N32 : G C1p_exo anti N33 : G C3p_endo anti N34 : G C2p_exo anti N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C2p_exo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N36-N37 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward N34-N36 : upward Number of stackings = 18 Number of adjacent stackings = 16 Number of non adjacent stackings = 2 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N31-N32 : U-G O2'/C8 adjacent_5p pairing N33-N34 : G-G Sw/Wh O2'/C8 adjacent_5p pairing antiparallel cis one_hbond N34-N35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C2p_endo syn N26 : G C3p_endo anti N27 : A C3p_endo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U C4p_endo anti N32 : G C3p_exo anti N33 : G C2p_exo anti N34 : G C3p_endo syn N35 : A C2p_endo anti N36 : G C3p_endo anti N37 : C C2p_exo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C2p_exo anti N43 : G C3p_endo anti N44 : C C2p_exo anti N45 : C O4p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis N18-N19 : G-C O2'/Hh adjacent_5p pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' pairing N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N25 : A-U O2'/Hh O2'/Ww pairing N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Wh/Wh pairing antiparallel cis one_hbond N33-N34 : G-G O2'/C8 adjacent_5p pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C3p_endo syn N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C2p_exo anti N31 : U C3p_endo anti N32 : G C1p_endo syn N33 : G C2p_endo anti N34 : G C1p_endo syn N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C2p_exo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis one_hbond N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N23-N34 : U-G Ww/Hw pairing antiparallel trans one_hbond N26-N39 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N33-N35 : G-A O2P/Bh pairing N34-N35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C2p_exo anti N19 : C C3p_endo anti N20 : A C3p_endo anti N21 : G C4p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U O4p_endo anti N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G O4p_endo anti N29 : C C2p_exo anti N30 : C C2p_exo anti N31 : U C3p_endo anti N32 : G C3p_endo anti N33 : G C2p_endo anti N34 : G C2p_exo anti N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 16 Number of adjacent stackings = 16 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N34 : C-G Bs/Ww pairing antiparallel cis 127 N34-N35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C4p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C3p_exo syn N26 : G C4p_exo anti N27 : A C2p_exo anti N28 : G C3p_endo anti N29 : C C2p_exo anti N30 : C C2p_endo anti N31 : U C2p_exo anti N32 : G C3p_exo anti N33 : G C3p_exo syn N34 : G C2p_exo syn N35 : A C3p_endo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C3p_endo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C1p_endo anti N45 : C C4p_exo anti N1 : ARG Adjacent stackings ---------------------------------------------- N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ Number of stackings = 14 Number of adjacent stackings = 14 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis one_hbond N18-N19 : G-C O2'/Hh adjacent_5p pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' pairing N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N34 : C-G Wh/Wh pairing antiparallel cis one_hbond N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N34 : C-G Bs/Ww pairing antiparallel cis 127 N31-N32 : U-G O2'/Ss adjacent_5p pairing N32-N33 : G-G Sw/Wh adjacent_5p pairing parallel cis one_hbond 114 N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C2p_exo anti N25 : U C2p_endo anti N26 : G C3p_endo anti N27 : A C3p_endo anti N28 : G C4p_exo anti N29 : C C2p_exo anti N30 : C C3p_endo anti N31 : U C3p_endo anti N32 : G C3p_endo anti N33 : G C2p_exo anti N34 : G C1p_endo syn N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C3p_endo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C3p_endo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ Number of stackings = 16 Number of adjacent stackings = 16 Number of non adjacent stackings = 0 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis 130 N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N34 : C-G Ww/Ww pairing antiparallel cis one_hbond N33-N34 : G-G O2P/Bs adjacent_5p pairing N34-N35 : G-A O2'/Hh adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C3p_endo anti N25 : U C3p_endo anti N26 : G C3p_endo anti N27 : A C2p_exo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C2p_exo anti N31 : U C3p_exo anti N32 : G C2p_exo anti N33 : G C3p_exo anti N34 : G C2p_exo syn N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C4p_exo anti N42 : U C2p_exo anti N43 : G C3p_endo anti N44 : C C1p_endo anti N45 : C C4p_exo anti N1 : ARG Adjacent stackings ---------------------------------------------- N18-N19 : adjacent_5p outward pairing N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N36-N37 : adjacent_5p upward N37-N38 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 14 Number of adjacent stackings = 13 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N19 : G-C O2'/Hh adjacent_5p outward pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' pairing N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N21-N41 : G-C Ww/Ww pairing antiparallel cis N22-N26 : A-G Wh/Hw pairing parallel cis one_hbond N25-N26 : U-G O2'/C8 adjacent_5p pairing N26-N39 : G-C Ww/Ww pairing antiparallel cis N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N34-N35 : G-A O2'/Hh adjacent_5p pairing N34-N36 : G-G Hh/O2P pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C2p_exo anti N22 : A C2p_exo anti N23 : U C3p_endo anti N24 : C C2p_exo anti N25 : U C1p_endo anti N26 : G C3p_endo anti N27 : A C3p_endo anti N28 : G C3p_endo anti N29 : C C3p_endo anti N30 : C C3p_endo anti N31 : U C3p_exo anti N32 : G C2p_exo anti N33 : G C2p_endo anti N34 : G C2p_exo syn N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C4p_exo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward pairing N30-N31 : adjacent_5p upward N37-N38 : adjacent_5p upward N38-N39 : adjacent_5p upward N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N20-N43 : outward Number of stackings = 18 Number of adjacent stackings = 17 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N1-N22 : ARG-A pairing one_hbond N17-N45 : G-C Ww/Ww pairing antiparallel cis XIX N18-N44 : G-C Ww/Ww pairing antiparallel cis XIX N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N25-N41 : U-C Ww/O2' pairing N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N30 : C-C O2P/Bh adjacent_5p upward pairing N29-N36 : C-G Ww/Ww pairing antiparallel cis XIX N30-N34 : C-G O2'/Bs pairing N33-N34 : G-G O2P/Bs adjacent_5p pairing Residue conformations ------------------------------------------- N17 : G C3p_endo anti N18 : G C1p_exo anti N19 : C C2p_exo anti N20 : A C2p_exo anti N21 : G C3p_endo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C3p_exo syn N26 : G C4p_exo anti N27 : A C4p_exo anti N28 : G C4p_exo anti N29 : C C3p_endo anti N30 : C C3p_endo anti N31 : U O4p_endo anti N32 : G C2p_exo anti N33 : G C2p_exo anti N34 : G C3p_endo anti N35 : A C2p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C4p_exo anti N39 : C C2p_exo anti N40 : U C3p_endo anti N41 : C C3p_endo anti N42 : U C2p_exo anti N43 : G C2p_exo anti N44 : C C3p_endo anti N45 : C O4p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p downward N18-N19 : adjacent_5p outward pairing N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N28-N29 : adjacent_5p upward N29-N30 : adjacent_5p upward pairing N39-N40 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N43-N44 : adjacent_5p inward Non-Adjacent stackings ------------------------------------------ N27-N39 : outward Number of stackings = 13 Number of adjacent stackings = 12 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N18-N19 : G-C O2'/Hh adjacent_5p outward pairing N18-N44 : G-C Ww/Ww pairing antiparallel cis N18-N45 : G-C Bs/O2' pairing N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis XIX N22-N40 : A-U Ww/Ww pairing antiparallel cis XX N23-N33 : U-G O2P/Bs pairing N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N28-N37 : G-C Ww/Ww pairing antiparallel cis XIX N29-N30 : C-C O2P/Bh adjacent_5p upward pairing N29-N31 : C-U O2P/Ww pairing N29-N36 : C-G Ww/Ww pairing antiparallel cis N30-N34 : C-G Ws/Ws pairing antiparallel cis one_hbond N33-N34 : G-G O2'/C8 adjacent_5p pairing N34-N35 : G-A O2'/Hh adjacent_5p pairing N35-N36 : A-G Ww/O2' adjacent_5p pairing N43-N45 : G-C Hh/O2P pairing N44-N45 : C-C Ss/Hh adjacent_5p pairing parallel cis one_hbond Residue conformations ------------------------------------------- N17 : G C2p_exo anti N18 : G C3p_endo anti N19 : C C2p_exo anti N20 : A C3p_endo anti N21 : G C2p_exo anti N22 : A C2p_exo anti N23 : U C2p_exo anti N24 : C C3p_endo anti N25 : U C2p_endo syn N26 : G C4p_exo anti N27 : A C4p_exo anti N28 : G C3p_endo anti N29 : C C2p_exo anti N30 : C C2p_exo anti N31 : U C2p_endo anti N32 : G C2p_exo anti N33 : G C2p_exo anti N34 : G C2p_exo syn N35 : A C3p_exo anti N36 : G C2p_exo anti N37 : C C3p_endo anti N38 : U C3p_endo anti N39 : C C3p_endo anti N40 : U C2p_exo anti N41 : C C3p_endo anti N42 : U C3p_endo anti N43 : G C3p_endo anti N44 : C C2p_exo anti N45 : C C3p_endo anti N1 : ARG Adjacent stackings ---------------------------------------------- N17-N18 : adjacent_5p upward N18-N19 : adjacent_5p upward N19-N20 : adjacent_5p upward N20-N21 : adjacent_5p upward N21-N22 : adjacent_5p upward N26-N27 : adjacent_5p upward N27-N28 : adjacent_5p upward N29-N30 : adjacent_5p upward N36-N37 : adjacent_5p upward N40-N41 : adjacent_5p upward N41-N42 : adjacent_5p upward N42-N43 : adjacent_5p upward N43-N44 : adjacent_5p upward N44-N45 : adjacent_5p upward Non-Adjacent stackings ------------------------------------------ N34-N36 : upward Number of stackings = 15 Number of adjacent stackings = 14 Number of non adjacent stackings = 1 Base-pairs ------------------------------------------------------ N17-N45 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 N18-N44 : G-C Ww/Ww pairing antiparallel cis N19-N43 : C-G Ww/Ww pairing antiparallel cis XIX N20-N42 : A-U Ww/Ww pairing antiparallel cis XX N21-N41 : G-C Ww/Ww pairing antiparallel cis N22-N40 : A-U Ww/Ww pairing antiparallel cis one_hbond N26-N39 : G-C Ww/Ww pairing antiparallel cis XIX N27-N38 : A-U Ww/Ww pairing antiparallel cis XX N29-N34 : C-G Ww/Ww pairing antiparallel cis XIX N30-N33 : C-G O2'/Ss O2'/C8 pairing N33-N34 : G-G O2'/Ss adjacent_5p pairing