|
Residue conformations |
|
A16 : G C3p_endo anti |
|
A17 : G C2p_exo anti |
|
A18 : C C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C2p_endo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C2p_exo anti |
|
A27 : A C2p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C2p_endo anti |
|
A31 : U C2p_endo anti |
|
A32 : G C3p_exo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C2p_endo syn |
|
A35 : A C2p_endo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : G C3p_endo anti |
|
A45 : C C3p_endo anti |
|
A46 : C C3p_endo anti |
|
A47 : ARG |
|
Adjacent stackings |
|
A16-A17 : adjacent_5p upward |
|
A17-A18 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
A45-A46 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 17 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A16-A46 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A30-A31 : C-U O2P/Ww adjacent_5p pairing |
|
|
