|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C2p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A O4p_endo anti |
|
A28 : G O4p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C4p_endo syn |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_exo anti |
|
A34 : G C2p_exo anti |
|
A35 : A C3p_exo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C2p_exo anti |
|
A38 : U C2p_exo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A28-A38 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A17-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis |
|
A29-A36 : C-G Ww/Wh pairing antiparallel cis one_hbond |
|
A31-A33 : U-G O2P/Hh pairing |
|
A32-A34 : G-G O2'/Bs pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C4p_exo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C2p_exo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C2p_exo anti |
|
A34 : G C3p_endo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C2p_exo anti |
|
A38 : U C2p_exo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A22-A41 : outward |
|
A27-A39 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 4 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A24 : A-C O2P/Bh pairing |
|
A22-A40 : A-U Ww/Ws pairing antiparallel cis |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A30-A34 : C-G Ws/Sw pairing antiparallel cis one_hbond 128 |
|
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing |
|
A34-A35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C3p_exo anti |
|
A25 : U O4p_endo syn |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : G O4p_endo anti |
|
A33 : G C3p_exo anti |
|
A34 : G C3p_endo syn |
|
A35 : A O4p_endo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A27-A39 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond |
|
A33-A34 : G-G O2P/Bs adjacent_5p pairing |
|
A34-A35 : G-A O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C4p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C2p_endo anti |
|
A25 : U C2p_exo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C4p_exo anti |
|
A32 : G C1p_endo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : A O4p_endo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C2p_exo anti |
|
A38 : U O4p_endo anti |
|
A39 : C C4p_exo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C2p_exo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A34-A35 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A42-A43 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A34-A36 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 15 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A24 : A-C O2P/Bh pairing |
|
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C1p_exo anti |
|
A23 : U C3p_exo syn |
|
A24 : C C3p_exo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C2p_exo anti |
|
A27 : A C2p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_endo anti |
|
A34 : G C3p_endo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C2p_exo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C2p_exo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
A22-A24 : upward |
|
A22-A41 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A23-A24 : U-C O2'/Hh adjacent_5p pairing |
|
A23-A41 : U-C Ww/O2' pairing |
|
A24-A40 : C-U Ws/Ww pairing antiparallel cis one_hbond 106 |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A30-A34 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 |
|
A33-A34 : G-G O2'/Ss adjacent_5p pairing |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C4p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C3p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : C O4p_endo anti |
|
A30 : C O4p_endo anti |
|
A31 : U O4p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_exo anti |
|
A34 : G C1p_endo syn |
|
A35 : A C2p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C2p_exo anti |
|
A38 : U C2p_exo anti |
|
A39 : C C2p_exo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C4p_exo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A32-A33 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis |
|
A26-A41 : G-C Ww/O2P pairing |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A31-A32 : U-G O2'/C8 adjacent_5p pairing |
|
A32-A34 : G-G O2'/Bs O2'/Ss pairing |
|
A34-A35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C2p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : G C4p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C4p_exo anti |
|
A29 : C C4p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C3p_endo anti |
|
A34 : G C3p_endo anti |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
A34-A36 : upward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A25-A27 : U-A Ws/Hw pairing parallel cis one_hbond 47 |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A33 : C-G Ww/Sw pairing antiparallel cis one_hbond 125 |
|
A32-A33 : G-G O2'/C8 adjacent_5p pairing |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C4p_exo syn |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C4p_exo anti |
|
A29 : C O4p_endo anti |
|
A30 : C O4p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_exo anti |
|
A33 : G C3p_endo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C4p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A22-A41 : outward |
|
A28-A38 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A31-A32 : U-G O2'/Ss adjacent_5p pairing |
|
A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109 |
|
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C2p_endo anti |
|
A25 : U C2p_endo syn |
|
A26 : G C2p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C4p_exo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C2p_exo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C2p_exo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis |
|
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A33-A34 : G-G O2P/Bs adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C3p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A O4p_endo anti |
|
A28 : G O4p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_exo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C2p_exo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A38-A39 : adjacent_5p upward |
|
A40-A41 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
A28-A38 : outward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C1p_endo syn |
|
A23 : U C2p_exo anti |
|
A24 : C C2p_exo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C4p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_exo anti |
|
A33 : G C2p_exo anti |
|
A34 : G C2p_exo anti |
|
A35 : A C2p_endo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C2p_exo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C4p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A34 : C-G O2'/Bs pairing |
|
A33-A34 : G-G O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C2p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : G C2p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_endo anti |
|
A34 : G C1p_endo anti |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C2p_exo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C2p_exo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
A41-A42 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A34-A36 : upward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 13 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A34 : C-G O2'/Ww pairing |
|
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C2p_exo anti |
|
A22 : A O4p_endo syn |
|
A23 : U C4p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C3p_endo syn |
|
A26 : G C3p_endo anti |
|
A27 : A C2p_exo anti |
|
A28 : G C4p_exo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C3p_endo syn |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_exo anti |
|
A34 : G C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C4p_exo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C4p_exo anti |
|
A42 : U C4p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
A27-A39 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A22-A41 : A-C Bh/O2' pairing |
|
A23-A40 : U-U Ww/Wh pairing antiparallel cis one_hbond |
|
A23-A41 : U-C Hw/Wh pairing antiparallel cis one_hbond 102 |
|
A25-A26 : U-G O2'/Hh adjacent_5p pairing |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A29-A30 : C-C Ss/Hh adjacent_5p pairing antiparallel trans one_hbond |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C3p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C4p_exo anti |
|
A30 : C C1p_exo anti |
|
A31 : U O4p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U O4p_endo anti |
|
A39 : C C4p_exo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward pairing |
|
A32-A33 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis |
|
A22-A24 : A-C O2P/Bh pairing |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A29-A30 : C-C O2P/Bh adjacent_5p upward pairing |
|
A29-A36 : C-G Wh/Wh pairing antiparallel cis one_hbond |
|
A34-A35 : G-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A17 : G O4p_endo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C4p_exo anti |
|
A20 : A C4p_exo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C3p_endo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C3p_endo syn |
|
A26 : G C2p_exo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C4p_exo anti |
|
A29 : C O4p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : U O4p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C1p_endo anti |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C2p_exo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C2p_exo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
Number of stackings = 14 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A30-A34 : C-G O2'/Bs pairing |
|
A33-A34 : G-G O2P/Bs adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C2p_exo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C3p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C3p_endo anti |
|
A27 : A C3p_endo anti |
|
A28 : G C3p_endo anti |
|
A29 : C C3p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C2p_exo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C3p_endo anti |
|
A37 : C C3p_endo anti |
|
A38 : U O4p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U O4p_endo anti |
|
A43 : G C2p_exo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
Number of stackings = 10 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis |
|
A22-A23 : A-U Ss/Hh adjacent_5p pairing antiparallel trans one_hbond |
|
A22-A24 : A-C O2P/Bh pairing |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis |
|
Residue conformations |
|
A17 : G C4p_exo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C4p_exo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C2p_endo anti |
|
A26 : G C2p_exo anti |
|
A27 : A O4p_endo anti |
|
A28 : G O4p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C4p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C3p_endo anti |
|
A34 : G O4p_exo anti |
|
A35 : A C1p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U O4p_endo anti |
|
A39 : C O4p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C4p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A22-A41 : outward |
|
Number of stackings = 13 |
|
Number of adjacent stackings = 11 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ws/Ws pairing antiparallel cis one_hbond |
|
A28-A38 : G-U Bs/O2' pairing |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A30-A33 : C-G O2'/Ss O2'/C8 pairing |
|
A31-A32 : U-G O2P/Hh adjacent_5p pairing |
|
A31-A33 : U-G O2P/Hh pairing |
|
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C2p_exo anti |
|
A20 : A C2p_exo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C1p_endo syn |
|
A23 : U C2p_exo anti |
|
A24 : C C1p_exo anti |
|
A25 : U C3p_endo syn |
|
A26 : G C3p_endo anti |
|
A27 : A C4p_exo anti |
|
A28 : G C4p_exo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C2p_exo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C2p_exo syn |
|
A35 : A C3p_exo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U O4p_endo anti |
|
A39 : C C4p_exo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C4p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C3p_endo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 8 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond |
|
A31-A33 : U-G Ww/O2P pairing |
|
A33-A34 : G-G O2P/Bs adjacent_5p pairing |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C3p_endo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C3p_endo anti |
|
A22 : A C2p_exo anti |
|
A23 : U C2p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C3p_endo syn |
|
A26 : G C3p_endo anti |
|
A27 : A C4p_exo anti |
|
A28 : G O4p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C O4p_endo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C3p_exo anti |
|
A34 : G C3p_endo anti |
|
A35 : A C2p_endo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C3p_endo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C2p_exo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C3p_endo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A37-A38 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A18-A45 : outward |
|
A20-A43 : outward |
|
A27-A39 : outward |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 9 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis |
|
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A29-A36 : C-G Ws/Ww pairing antiparallel cis one_hbond |
|
A31-A32 : U-G Ww/Hw adjacent_5p pairing parallel cis one_hbond |
|
Residue conformations |
|
A17 : G C3p_endo anti |
|
A18 : G C2p_exo anti |
|
A19 : C C3p_endo anti |
|
A20 : A C3p_endo anti |
|
A21 : G C2p_exo anti |
|
A22 : A C3p_endo anti |
|
A23 : U C3p_exo anti |
|
A24 : C C3p_endo anti |
|
A25 : U C1p_exo syn |
|
A26 : G C3p_endo anti |
|
A27 : A O4p_endo anti |
|
A28 : G O4p_endo anti |
|
A29 : C C2p_exo anti |
|
A30 : C C2p_exo anti |
|
A31 : U C3p_endo anti |
|
A32 : G C3p_endo anti |
|
A33 : G C2p_endo anti |
|
A34 : G C2p_exo anti |
|
A35 : A C4p_endo anti |
|
A36 : G C2p_exo anti |
|
A37 : C C3p_endo anti |
|
A38 : U C2p_exo anti |
|
A39 : C C3p_endo anti |
|
A40 : U C3p_endo anti |
|
A41 : C C3p_endo anti |
|
A42 : U C2p_exo anti |
|
A43 : G C3p_endo anti |
|
A44 : C C2p_exo anti |
|
A45 : C C3p_endo anti |
|
Adjacent stackings |
|
A17-A18 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A36-A37 : adjacent_5p upward |
|
A39-A40 : adjacent_5p upward |
|
A43-A44 : adjacent_5p upward |
|
A44-A45 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A20-A43 : outward |
|
A21-A42 : outward |
|
A22-A41 : outward |
|
Number of stackings = 15 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A17-A45 : G-C Ww/Ww pairing antiparallel cis |
|
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX |
|
A21-A41 : G-C Ww/Ww pairing antiparallel cis |
|
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX |
|
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing |
|
|
