|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : C C3p_endo anti |
|
A3 : U C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : C C3p_endo anti |
|
A6 : G C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : BRU |
|
B10 : G C3p_endo anti |
|
B11 : C C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : U C2p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : C C3p_endo anti |
|
B18 : BRU |
|
A19 : RHD |
|
A20 : RHD |
|
A22 : RHD |
|
B21 : RHD |
|
A23 : HOH |
|
A25 : HOH |
|
A26 : HOH |
|
A27 : HOH |
|
A28 : HOH |
|
A29 : HOH |
|
A30 : HOH |
|
A31 : HOH |
|
A33 : HOH |
|
A35 : HOH |
|
A36 : HOH |
|
A37 : HOH |
|
A38 : HOH |
|
A41 : HOH |
|
A43 : HOH |
|
A47 : HOH |
|
A48 : HOH |
|
A51 : HOH |
|
A53 : HOH |
|
A54 : HOH |
|
A56 : HOH |
|
A57 : HOH |
|
A59 : HOH |
|
A60 : HOH |
|
A61 : HOH |
|
A63 : HOH |
|
A64 : HOH |
|
A65 : HOH |
|
A66 : HOH |
|
A73 : HOH |
|
A74 : HOH |
|
B24 : HOH |
|
B32 : HOH |
|
B34 : HOH |
|
B39 : HOH |
|
B40 : HOH |
|
B42 : HOH |
|
B44 : HOH |
|
B45 : HOH |
|
B46 : HOH |
|
B49 : HOH |
|
B50 : HOH |
|
B52 : HOH |
|
B55 : HOH |
|
B58 : HOH |
|
B62 : HOH |
|
B67 : HOH |
|
B68 : HOH |
|
B69 : HOH |
|
B70 : HOH |
|
B71 : HOH |
|
B72 : HOH |
|
B75 : HOH |
|
B76 : HOH |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A7-A8 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B13-B14 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
Number of stackings = 12 |
|
Number of adjacent stackings = 12 |
|
Number of non adjacent stackings = 0 |
|
Base-pairs |
|
A1-B17 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A3-B15 : U-G Ws/Ww pairing antiparallel cis XXVIII |
|
A4-B14 : U-C Wh/Wh pairing antiparallel cis one_hbond |
|
A5-B13 : C-U Wh/Wh pairing antiparallel cis one_hbond |
|
A6-B12 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A7-B11 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B10 : C-G Ww/Ww pairing antiparallel cis XIX |
|
|
