|
Residue conformations |
|
A2 : G C3p_endo anti |
|
A3 : G C3p_endo anti |
|
A4 : U C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : A O4p_endo anti |
|
A7 : U C2p_endo anti |
|
A8 : A C2p_endo anti |
|
A9 : A O4p_endo anti |
|
A10 : G C3p_endo anti |
|
A11 : C C3p_endo anti |
|
A12 : U C3p_endo anti |
|
A13 : C C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : A C3p_endo anti |
|
B20 : G C3p_endo anti |
|
B21 : U C3p_endo anti |
|
B22 : A C3p_endo anti |
|
B23 : C C3p_endo anti |
|
B24 : C C3p_endo anti |
|
Adjacent stackings |
|
A3-A4 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
B19-B20 : adjacent_5p upward |
|
B20-B21 : adjacent_5p upward |
|
B22-B23 : adjacent_5p upward pairing |
|
B23-B24 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-B22 : outward |
|
Number of stackings = 11 |
|
Number of adjacent stackings = 10 |
|
Number of non adjacent stackings = 1 |
|
Base-pairs |
|
A2-B21 : G-U Hh/O2P pairing |
|
A2-B24 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-B23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A4-B22 : U-A Ws/Wh pairing antiparallel cis one_hbond 46 |
|
A6-A9 : A-A O2'/Bh pairing |
|
A7-A8 : U-A O2P/Bh adjacent_5p pairing |
|
A10-B21 : G-U Ww/Ws pairing antiparallel cis XXVIII |
|
A11-B20 : C-G Ww/Ww pairing antiparallel cis |
|
A12-B19 : U-A Ww/Ww pairing antiparallel cis XX |
|
A13-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B22-B23 : A-C O2P/Bh adjacent_5p upward pairing |
|
|
